FC923164
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28 Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SNG + +CM+ W P KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE P YYDGRYW MWKLPMFGC Sbjct: 50 SNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28 Identity = 63/129 (48.84%), Postives = 82/129 (63.57%), Query Frame = 1 Query: 316 SASIFTAPVAGSG------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 +A TA AG+ + GLK + + K S +SS SNG + +CM+ W P+ KKFE LSYLP LSD + ++ Y+L KGWIPC+EF+ E +V+REN R PGY DGRYW MWKLPM+GC Sbjct: 9 AAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLP-SNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGC 136
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28 Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1 Query: 361 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 GLK S A PV + SNG + +CM+ W P+ KKFE LSYLP LSD + ++ Y+L KGWIPC+EF+ E +V+REN R PGY DGRYW MWKLPM+GC Sbjct: 32 GLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGC 137
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.385e-28 Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 1 Query: 313 MSASIFTAPVAGSG--------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + ++ TA V SG + GLK S A PV + SNG + +CM+ W P+ KKFE LSYLP LSD + ++ Y+L GWIPC+EF+ E +V+REN R PGY DGRYW MWKLPM+GC Sbjct: 5 LMSNAITAVVGASGAQANMVAPFNGLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28 Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 418 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + SNG + +CM W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYW MWKLPMFGC Sbjct: 47 TSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28 Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFG 678 SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ + G+V+ E+++ P YYDGRYW MWKLPMFG Sbjct: 6 SNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFG 89
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27 Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SNG + +CMK W N K++E LSYLP L+ D +A+++DY+L W+PCLEF+ + G+V+RE+ PGYYDGRYW MWKLPMFGC Sbjct: 50 SNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22 Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1 Query: 454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFG 678 M+ W P+ KKFE LSYLP L+ + + E++Y+L KGWIP LEF+ + G+V+RE+ + PGYYDGRYW MWKLPMFG Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFG 76
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22 Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 1 Query: 427 VSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGCM 684 +SNG SK+R M W P NNK FE SYLP L+DD I K++DY+L+ W PCLEF + YV +N+ G Y D RYW MWKLPMFGC+ Sbjct: 25 LSNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCI 119
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22 Identity = 56/130 (43.08%), Postives = 69/130 (53.08%), Query Frame = 1 Query: 313 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681 M+A++ + + S K SK + P K SI S K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYW MWKLPMFGC Sbjct: 1 MAATMMSKTIISS-----KQCSKPIAPPKVSINKGFVNTSAAIKNREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGC 125 The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 105
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bpback to top |