FC923164
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21 Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 1 Query: 391 PVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681 P S +W ++ G K MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYW MWKLPMFGC Sbjct: 691 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 791 HSP 2 Score: 102.834 bits (255), Expect = 1.799e-21 Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYW MWKLPMFGC Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 217 HSP 3 Score: 102.834 bits (255), Expect = 1.799e-21 Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYW MWKLPMFGC Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 361 HSP 4 Score: 102.834 bits (255), Expect = 1.799e-21 Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYW MWKLPMFGC Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 648 HSP 5 Score: 102.834 bits (255), Expect = 1.799e-21 Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYW MWKLPMFGC Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 936 HSP 6 Score: 102.834 bits (255), Expect = 1.799e-21 Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYW MWKLPMFGC Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 1079 HSP 7 Score: 102.834 bits (255), Expect = 1.799e-21 Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYW MWKLPMFGC Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 1223 HSP 8 Score: 101.679 bits (252), Expect = 4.008e-21 Identity = 51/104 (49.04%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 391 PVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681 P S +W ++ G K MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD YW MWKLPMFGC Sbjct: 404 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGC 504
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21 Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 1 Query: 313 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681 ++ S +A VA ++P + AL P A + V+ ++ M W P+NNK FE SYLP LSD+ IA ++DY++ GWIPCLEF E YV E++ G YYD RYW MWKLPMFGC Sbjct: 5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGC 128
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21 Identity = 56/130 (43.08%), Postives = 75/130 (57.69%), Query Frame = 1 Query: 313 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681 ++ S +A VA ++P + AL P A + V+ ++ M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++ G YYD RYW MWKLPMFGC Sbjct: 5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGC 128
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20 Identity = 36/61 (59.02%), Postives = 51/61 (83.61%), Query Frame = 1 Query: 499 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 +YLP LS +++ K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYW MWKLPMFGC Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGC 61
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20 Identity = 45/87 (51.72%), Postives = 53/87 (60.92%), Query Frame = 1 Query: 442 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681 K+R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYW MWKLPMFGC Sbjct: 41 KSREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 127
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20 Identity = 55/130 (42.31%), Postives = 69/130 (53.08%), Query Frame = 1 Query: 313 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681 MSA++ V S + ++ K S A TV+N K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYW MWKLPMFGC Sbjct: 1 MSAAMMNKSVVLSKQCTKPAATPKVVTSKRSFA---STVAN--KNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 125
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20 Identity = 45/87 (51.72%), Postives = 52/87 (59.77%), Query Frame = 1 Query: 442 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681 K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYW MWKLPMFGC Sbjct: 40 KDRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 126
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20 Identity = 45/88 (51.14%), Postives = 53/88 (60.23%), Query Frame = 1 Query: 439 SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681 +K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYW MWKLPMFGC Sbjct: 38 NKKREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 125
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20 Identity = 45/87 (51.72%), Postives = 52/87 (59.77%), Query Frame = 1 Query: 442 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681 K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYW MWKLPMFGC Sbjct: 40 KCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGC 126
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20 Identity = 48/112 (42.86%), Postives = 61/112 (54.46%), Query Frame = 1 Query: 367 KPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681 K +K L K ++ + +K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYW MWKLPMFGC Sbjct: 5 KECAKPLATPKVTLNKRGFATTIATKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 116 The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 105
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bpback to top |