FC923164

Overview
NameFC923164
Unique NameFC923164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14396 contig Ccv1_Contig14396:1..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  391 PVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681
            P   S +W    ++ G K   MK WNP+NNKKFE  SYLP LSD  IAK++D ++ KG  PCLEF   E  ++  +N+        GYYD RYW MWKLPMFGC
Sbjct:  691 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 791          

HSP 2 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681
            MK WNP+NNKKFE  SYLP LSD  IAK++D ++ KG  PCLEF   E  ++  +N+        GYYD RYW MWKLPMFGC
Sbjct:  135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 217          

HSP 3 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681
            MK WNP+NNKKFE  SYLP LSD  IAK++D ++ KG  PCLEF   E  ++  +N+        GYYD RYW MWKLPMFGC
Sbjct:  279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 361          

HSP 4 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681
            MK WNP+NNKKFE  SYLP LSD  IAK++D ++ KG  PCLEF   E  ++  +N+        GYYD RYW MWKLPMFGC
Sbjct:  566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 648          

HSP 5 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681
            MK WNP+NNKKFE  SYLP LSD  IAK++D ++ KG  PCLEF   E  ++  +N+        GYYD RYW MWKLPMFGC
Sbjct:  854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 936          

HSP 6 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681
            MK WNP+NNKKFE  SYLP LSD  IAK++D ++ KG  PCLEF   E  ++  +N+        GYYD RYW MWKLPMFGC
Sbjct:  997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 1079          

HSP 7 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 47/83 (56.63%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681
            MK WNP+NNKKFE  SYLP LSD  IAK++D ++ KG  PCLEF   E  ++  +N+        GYYD RYW MWKLPMFGC
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGC 1223          

HSP 8 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 51/104 (49.04%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  391 PVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681
            P   S +W    ++ G K   MK WNP+NNKKFE  SYLP LSD  IAK++D ++ KG  PCLEF   E  ++  +N+        GYYD  YW MWKLPMFGC
Sbjct:  404 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGC 504          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  313 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            ++ S  +A VA      ++P + AL P     A  +  V+  ++   M  W P+NNK FE  SYLP LSD+ IA ++DY++  GWIPCLEF E    YV  E++   G     YYD RYW MWKLPMFGC
Sbjct:    5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGC 128          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.377e-21
Identity = 56/130 (43.08%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  313 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            ++ S  +A VA      ++P + AL P     A  +  V+  ++   M  W P+NNK FE  SYLP L+D+ IA ++DY++  GWIPCLEF E    YV  E++   G     YYD RYW MWKLPMFGC
Sbjct:    5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGC 128          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 36/61 (59.02%), Postives = 51/61 (83.61%), Query Frame = 1
Query:  499 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            +YLP LS +++ K++DY+++  W+PCLEF +VG++ RE++  PGYYDGRYW MWKLPMFGC
Sbjct:    1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGC 61          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 45/87 (51.72%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  442 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            K+R M  W P NNK FE  SYLP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:   41 KSREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 127          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 55/130 (42.31%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  313 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            MSA++    V  S        +  ++  K S A    TV+N  K R M  W P NNK FE  S+LP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:    1 MSAAMMNKSVVLSKQCTKPAATPKVVTSKRSFA---STVAN--KNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 125          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 45/87 (51.72%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  442 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            K R M  W P NNK FE  SYLP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:   40 KDRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 126          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 45/88 (51.14%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  439 SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            +K R M  W P NNK FE  SYLP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:   38 NKKREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 125          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 45/87 (51.72%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  442 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            K R M  W P NNK FE  SYLP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:   40 KCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGC 126          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 48/112 (42.86%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  367 KPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            K  +K L   K ++       +  +K R M  W P NNK FE  S+LP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:    5 KECAKPLATPKVTLNKRGFATTIATKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 116          
The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
RBS_EUGGR1.055e-2150.00Ribulose bisphosphate carboxylase small chains, ch... [more]
RBS2_CHLRE1.055e-2143.85Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE1.377e-2143.08Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_WHEAT1.523e-2059.02Ribulose bisphosphate carboxylase small chain clon... [more]
RBS5_ACECL5.787e-2051.72Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT5.787e-2042.31Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS7_ACECL7.558e-2051.72Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS4_ACECL7.558e-2051.14Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_ACECL7.558e-2051.72Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_ACEAT9.871e-2042.86Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionC31701G07EF StrClemenN Citrus clementina cDNA clone C31701G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bp
GCTCACCTAAAACTTTTCTCAAAGAAAGTTATCGAGCGGAGAGTAGAAAG
GGTGGTGATGAAACCAAAGCTGTAGACACTCCACTTTCCTTATACAAATC
CTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTAACAAACCATACA
GCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGT
TTCCATTGCCTTGAGAACTAAAATAATTAATTATTACTCTTTTGCTATCT
CGGTCTTAAGTGTCGCCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAG
TGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTC
TGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGG
ATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGA
TGCATGAAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTC
CTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACA
TGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATAT
GTGCACAGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTG
GGCAATGTGGAAGTTGCCAATGTTTGGATGCATGATTCATCTCAATC
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