FC923167

Overview
NameFC923167
Unique NameFC923167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: LPXZ_CHLTE (Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidum GN=lpxC/fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 44/73 (60.27%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  462 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVML 680
            + DIN I++ILPHR+PFLL+D+++E+      V+IKNVT+N+ FF GHFP  PIMPGVL++EAMAQ GG++ML
Sbjct:  323 IFDINAIQNILPHRYPFLLIDKIVEFKLDEKIVSIKNVTMNEPFFQGHFPGNPIMPGVLIIEAMAQTGGIMML 395          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_GLOVI ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Gloeobacter violaceus GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 47/71 (66.20%), Postives = 59/71 (83.10%), Query Frame = 3
Query:  462 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 674
            ++D  +I+ IL HR+PFLLVDRV+ + PGV AV IKNVTIN+ FF GHFP RP+MPG L++EAMAQVGG+V
Sbjct:    1 MIDNIEIQKILAHRYPFLLVDRVLVFEPGVRAVGIKNVTINEPFFQGHFPGRPLMPGALLIEAMAQVGGIV 71          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_CLOBM ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  465 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 689
            +DIN+I+ I+PHR+PFLLVD++ E   G SAV  KNVT N+ FF GHFPE P+MPGVL++EA+AQVG + +L  E
Sbjct:    5 LDINEIKKIIPHRYPFLLVDKITELEEGKSAVGYKNVTANEYFFNGHFPEEPVMPGVLIIEALAQVGAVAILSKE 79          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_CLOBL ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  465 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 689
            +DIN+I+ I+PHR+PFLLVD++ E   G SAV  KNVT N+ FF GHFPE P+MPGVL++EA+AQVG + +L  E
Sbjct:    5 LDINEIKKIIPHRYPFLLVDKITELEEGKSAVGYKNVTANEYFFNGHFPEEPVMPGVLIIEALAQVGAVAILSKE 79          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_CLOBJ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  465 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 689
            +DIN+I+ I+PHR+PFLLVD++ E   G SAV  KNVT N+ FF GHFPE P+MPGVL++EA+AQVG + +L  E
Sbjct:    5 LDINEIKKIIPHRYPFLLVDKITELEEGKSAVGYKNVTANEYFFNGHFPEEPVMPGVLIIEALAQVGAVAILSKE 79          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_CLOBH ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  465 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 689
            +DIN+I+ I+PHR+PFLLVD++ E   G SAV  KNVT N+ FF GHFPE P+MPGVL++EA+AQVG + +L  E
Sbjct:    5 LDINEIKKIIPHRYPFLLVDKITELEEGKSAVGYKNVTANEYFFNGHFPEEPVMPGVLIIEALAQVGAVAILSKE 79          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_CLOB6 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  465 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 689
            +DIN+I+ I+PHR+PFLLVD++ E   G SAV  KNVT N+ FF GHFPE P+MPGVL++EA+AQVG + +L  E
Sbjct:    5 LDINEIKKIIPHRYPFLLVDKITELEEGKSAVGYKNVTANEYFFNGHFPEEPVMPGVLIIEALAQVGAVAILSKE 79          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_CLOB1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  465 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPE 689
            +DIN+I+ I+PHR+PFLLVD++ E   G SAV  KNVT N+ FF GHFPE P+MPGVL++EA+AQVG + +L  E
Sbjct:    5 LDINEIKKIIPHRYPFLLVDKITELEEGKSAVGYKNVTANEYFFNGHFPEEPVMPGVLIIEALAQVGAVAILSKE 79          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS195) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 3
Query:  465 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 674
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++EAMAQ  GL+
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILEAMAQATGLL 77          
BLAST of FC923167 vs. ExPASy Swiss-Prot
Match: FABZ_SHEB8 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Shewanella baltica (strain OS185) GN=fabZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.226e-21
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 3
Query:  465 MDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 674
            MDI +I   LPHR+PFLL+DRV++Y PGVS  AIKNV+IN+ FF GHFP +P+MPGVL++EAMAQ  GL+
Sbjct:    8 MDIKEILKYLPHRYPFLLIDRVLDYTPGVSLQAIKNVSINEPFFQGHFPIQPVMPGVLILEAMAQATGLL 77          
The following BLAST results are available for this feature:
BLAST of FC923167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LPXZ_CHLTE2.477e-2160.27Bifunctional enzyme lpxC/fabZ OS=Chlorobium tepidu... [more]
FABZ_GLOVI2.477e-2166.20(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOBM2.477e-2160.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOBL2.477e-2160.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOBJ2.477e-2160.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOBH2.477e-2160.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOB62.477e-2160.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_CLOB12.477e-2160.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB94.226e-2165.71(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SHEB84.226e-2165.71(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionC31701G10EF StrClemenN Citrus clementina cDNA clone C31701G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923167 ID=FC923167; Name=FC923167; organism=Citrus clementina; type=EST; length=723bp
GCTTTACACAGTACAACTTTTGCCAACACCCAATCCCATCATTGGTCTCT
CCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAACTGT
CATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTTATTA
GTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCAGTTC
TTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATTCACT
TTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTTTTCTATTTCAA
AACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACAACAA
CAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGGACGC
TGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTACCAGG
CATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCCACAC
AGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAGGAGT
TTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTTCCTG
GCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGAGGCA
ATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAGTGGGAGCTCTC
GTGAAAATTTCTCTTTGCTGAAT
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