FC923217

Overview
NameFC923217
Unique NameFC923217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_BACC2 (Bifunctional protein folD OS=Bacillus cereus (strain G9842) GN=folD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.638e-18
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:  295 ATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            A +I G  +AE+ R+ + +EV ++K+  G VPGLAVILVGE   S++YV+ K K CE+VGI S + E  +  TE+ +L  +   N D  IN
Sbjct:    3 AVIIKGNEVAEKKRAQLTEEVVKLKEQ-GIVPGLAVILVGEDPASRSYVKGKEKGCEQVGIYSELIELPETITEERLLAEIDRLNGDDRIN 92

HSP 2 Score: 40.817 bits (94), Expect = 1.638e-18
Identity = 15/37 (40.54%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNL 652
            I++++    H++E  I++ +S EKDVDGFHP+++G +
Sbjct:   94 ILVQLPLPKHIEEKAIIERISPEKDVDGFHPISVGRM 130
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_VIBFM (Bifunctional protein folD OS=Vibrio fischeri (strain MJ11) GN=folD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.638e-18
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  292 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            TA +IDGK I++ +RS +   V+   ++  + PGLAV+LVG+   SQ YV +K +ACEEVG  S   +     +E E+LN +   NQD  I+
Sbjct:    2 TAQIIDGKLISQTVRSEVGARVKARVEAGLRAPGLAVVLVGQDPASQVYVGSKRRACEEVGFVSKSYDLPTTTSESELLNLIDELNQDPEID 93

HSP 2 Score: 41.9726 bits (97), Expect = 1.638e-18
Identity = 18/40 (45.00%), Postives = 27/40 (67.50%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAMR 661
            I++++     +D  KIL+ +  EKDVDGFHP N+G L+ R
Sbjct:   95 ILVQLPLPAGMDSTKILEHIDPEKDVDGFHPYNVGRLSQR 134
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_VIBF1 (Bifunctional protein folD OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=folD PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.638e-18
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:  292 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            TA +IDGK I++ +RS +   V+   ++  + PGLAV+LVG+   SQ YV +K +ACEEVG  S   +     +E E+LN +   NQD  I+
Sbjct:    2 TAQIIDGKLISQTVRSEVGARVKARVEAGLRAPGLAVVLVGQDPASQVYVGSKRRACEEVGFVSKSYDLPTTTSESELLNLIDELNQDPEID 93

HSP 2 Score: 41.9726 bits (97), Expect = 1.638e-18
Identity = 18/40 (45.00%), Postives = 27/40 (67.50%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAMR 661
            I++++     +D  KIL+ +  EKDVDGFHP N+G L+ R
Sbjct:   95 ILVQLPLPAGMDSTKILEHIDPEKDVDGFHPYNVGRLSQR 134
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_STRS7 (Bifunctional protein folD OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=folD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.639e-18
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +IDGK++A+++++ + K+V  +K   G VPGL VILVG+   SQ YVRNK +A    G KS     +D   ++E++  +  YNQD +I+
Sbjct:    4 IIDGKALAQKMQAALAKKVESLKAEKGIVPGLVVILVGDNPASQVYVRNKERAALAAGFKSETVRLSDSVCQEELIELIEQYNQDDTIH 92

HSP 2 Score: 36.5798 bits (83), Expect = 1.639e-18
Identity = 14/37 (37.84%), Postives = 26/37 (70.27%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNL 652
            I++++    H+++  I+  +  +KDVDGFHP+N G+L
Sbjct:   94 ILVQLPLPHHINDKSIILAIDPKKDVDGFHPMNTGHL 130
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_STREM (Bifunctional protein folD OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=folD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.639e-18
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +IDGK++A+++++ + K+V  +K   G VPGL VILVG+   SQ YVRNK +A    G KS     +D   ++E++  +  YNQD +I+
Sbjct:    4 IIDGKALAQKMQAALAKKVESLKAEKGIVPGLVVILVGDNPASQVYVRNKERAALAAGFKSETVRLSDSVCQEELIELIEQYNQDDTIH 92

HSP 2 Score: 36.5798 bits (83), Expect = 1.639e-18
Identity = 14/37 (37.84%), Postives = 26/37 (70.27%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNL 652
            I++++    H+++  I+  +  +KDVDGFHP+N G+L
Sbjct:   94 ILVQLPLPHHINDKSIILAIDPKKDVDGFHPMNTGHL 130
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_STRE4 (Bifunctional protein folD OS=Streptococcus equi subsp. equi (strain 4047) GN=folD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.639e-18
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +IDGK++A+++++ + K+V  +K   G VPGL VILVG+   SQ YVRNK +A    G KS     +D   ++E++  +  YNQD +I+
Sbjct:    4 IIDGKALAQKMQAALAKKVESLKAEKGIVPGLVVILVGDNPASQVYVRNKERAALAAGFKSETVRLSDSVCQEELIELIEQYNQDDTIH 92

HSP 2 Score: 36.5798 bits (83), Expect = 1.639e-18
Identity = 14/37 (37.84%), Postives = 26/37 (70.27%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNL 652
            I++++    H+++  I+  +  +KDVDGFHP+N G+L
Sbjct:   94 ILVQLPLPHHINDKSIILAIDPKKDVDGFHPMNTGHL 130
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_AZOVD (Bifunctional protein folD OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=folD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.639e-18
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:  292 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            TA +IDGK+IA  +R  I + V   ++   + PGLAVILVG    SQ YV +K K CEEVG  S   +     T+ E+L+ +   N+DS+I+
Sbjct:    2 TAKLIDGKAIAASLRQQIAQCVAERRQQGLRAPGLAVILVGTDPASQVYVSHKRKDCEEVGFHSRAYDLPASTTQGELLSLIDRLNEDSAID 93

HSP 2 Score: 44.2838 bits (103), Expect = 1.639e-18
Identity = 19/40 (47.50%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAMR 661
            I++++   +HLD   +L+ +  +KDVDGFHP NIG LA R
Sbjct:   95 ILVQLPLPVHLDASLLLERIRPDKDVDGFHPYNIGRLAQR 134
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_DESOH (Bifunctional protein folD OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=folD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.127e-18
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:  292 TATVIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +A +I G  I EEI   I+ EV+ +K+  GKVPGL  ILVGE   S +YV  KI+    VG K +        +E ++L  +  YN+D SI+
Sbjct:    2 SAKLIKGTEIREEILKEIEAEVKEIKEKHGKVPGLVTILVGESPASISYVTLKIQTAHRVGFKEVQDSQPVDISEADLLALIDKYNKDDSIH 93

HSP 2 Score: 46.9802 bits (110), Expect = 2.127e-18
Identity = 18/41 (43.90%), Postives = 30/41 (73.17%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAMRG 664
            I++++    H+DE K+L+ +  +KDVDGFHP+N+G L + G
Sbjct:   95 ILVQLPLPKHIDEKKVLNAIDPDKDVDGFHPVNVGRLMIGG 135
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_CHLPD (Bifunctional protein folD OS=Chlorobium phaeobacteroides (strain DSM 266) GN=folD PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.129e-18
Identity = 37/89 (41.57%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            +IDGK I++++++ +  +V   + SIGKVPGL VI+VG    SQ YVRNK K+C E+G+ S V E      ++ +L A+   NQD +++
Sbjct:    3 IIDGKKISQDLKNELKTDVAHFQASIGKVPGLTVIIVGHDPASQVYVRNKAKSCLEIGMHSTVIEMPHDTPQETLLQAIRELNQDPAVH 91

HSP 2 Score: 33.4982 bits (75), Expect = 2.129e-18
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 2 
Query:  572 LDEGKILDVVSLEKDVDGFHPLNIGNLAM 658
            +DE  +   +   KDVDGFHP N+G L M
Sbjct:  103 IDEFAVTLAIDPSKDVDGFHPENLGRLVM 131
[Close]
BLAST of FC923217 vs. ExPASy Swiss-Prot
Match: FOLD_CHLCH (Bifunctional protein folD OS=Chlorobium chlorochromatii (strain CaD3) GN=folD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.129e-18
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:  301 VIDGKSIAEEIRSGIDKEVRRMKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 567
            VIDGK ++ E+++ + + V  +    GKVPGL VI+VGE   SQ YVRNK K+C+E+G+ S V E     T++ +L  +++ N D +++
Sbjct:    3 VIDGKKVSLELKNELRERVEALNAKCGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTQEHLLKIINDLNNDDTVH 91

HSP 2 Score: 33.8834 bits (76), Expect = 2.129e-18
Identity = 16/39 (41.03%), Postives = 22/39 (56.41%), Query Frame = 2 
Query:  542 IIIRIHQLMHLDEGKILDVVSLEKDVDGFHPLNIGNLAM 658
            I+++      +DE  I   +   KDVDGFHP N+G L M
Sbjct:   93 ILVQQPMPKQIDEFTITLAIDPAKDVDGFHPENLGRLVM 131
The following BLAST results are available for this feature:
BLAST of FC923217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_BACC21.638e-1843.96Bifunctional protein folD OS=Bacillus cereus (stra... [more]
FOLD_VIBFM1.638e-1841.30Bifunctional protein folD OS=Vibrio fischeri (stra... [more]
FOLD_VIBF11.638e-1841.30Bifunctional protein folD OS=Vibrio fischeri (stra... [more]
FOLD_STRS71.639e-1840.45Bifunctional protein folD OS=Streptococcus equi su... [more]
FOLD_STREM1.639e-1840.45Bifunctional protein folD OS=Streptococcus equi su... [more]
FOLD_STRE41.639e-1840.45Bifunctional protein folD OS=Streptococcus equi su... [more]
FOLD_AZOVD1.639e-1842.39Bifunctional protein folD OS=Azotobacter vinelandi... [more]
FOLD_DESOH2.127e-1840.22Bifunctional protein folD OS=Desulfococcus oleovor... [more]
FOLD_CHLPD2.129e-1841.57Bifunctional protein folD OS=Chlorobium phaeobacte... [more]
FOLD_CHLCH2.129e-1840.45Bifunctional protein folD OS=Chlorobium chlorochro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31702C12EF StrClemenN Citrus clementina cDNA clone C31702C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923217 ID=FC923217; Name=FC923217; organism=Citrus clementina; type=EST; length=684bp
TGTAAAAATCCAACAAGAGGGGTTCATAATATTAATAGCGGATGATGATG
ATGGCTAGAAGAACAATGCGAAGGATGGTGGGGGCAACAGCGTGGCCATG
GGCATGGGCGACGAGGAGTCTAAACCTTAGTGCGATAAATGACAACAGAA
TTATAATGTCACCACCGCTTATCACTCTAGACCTCCCCGAAATTTGGACT
CCTCCTAATTCCCGTGACTGTAATCCTCTCCCACAACGAAATTGCTATCC
TATGTGGTTGATATTTGAGGTTCACCACAGCCAATCTACAGACCGCTACC
GTAATAGATGGAAAGTCCATTGCCGAGGAGATCAGGTCAGGTATAGATAA
GGAAGTAAGGAGAATGAAGAAATCTATCGGAAAAGTTCCTGGCTTGGCTG
TTATTTTGGTGGGCGAAAGAAGGGACTCACAAACTTATGTTCGCAACAAG
ATAAAAGCTTGTGAAGAAGTTGGAATCAAGTCCATTGTAACTGAATTTGC
TGATGGTTGTACAGAAGATGAAGTTCTTAATGCCTTGTCAAATTATAATC
AGGATTCATCAATTAATGCATTTGGATGAGGGAAAGATCTTGGATGTTGT
GAGCTTGGAAAAAGATGTGGATGGCTTCCATCCACTAAATATAGGGAATC
TCGCCATGAGAGGAAGGGGACCACTGTTTATTCA
back to top