FC923270

Overview
NameFC923270
Unique NameFC923270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36
Identity = 83/223 (37.22%), Postives = 136/223 (60.99%), Query Frame = 3
Query:   18 RTVNPIRYTYKELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            ++V+   +T + +++ T ++K  +G+GG+GSV+RG L +   VAVK+       G +EF NE+  +  I H ++V LLG+C+E +++ L+Y FM NGSL   ++ +  +S  + L W     IA G ARG+ YLH    + ++H D+K  NILLD +   K++DFG +K   ++         RGTAGY+ PE +     ++S KSDV+S+G++LLE+V  R+
Sbjct:  579 KSVSVKPFTLEYIEQATEQYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGE--ASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQ--QLSEKSDVFSFGVVLLEIVSGRE 797          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36
Identity = 92/228 (40.35%), Postives = 134/228 (58.77%), Query Frame = 3
Query:   39 YTYKELKKITSRFK--HRLGQGGYGSVFRG----------KLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            +T+ ELK  T  F+    LG+GG+G VF+G          K  + I VAVK L+     G +E++ EV  +G++ H ++V+L+G+C EG  R L+YEFMP GSLE  +F +      +PL+W    K+A G A+G+ +LH   +Q +++ D K  NILLD  F  K+SDFGLAK           T   GT GY APE  +   G ++ KSDVYS+G++LLE++  R+
Sbjct:   71 FTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRR----GAQPLTWAIRMKVAIGAAKGLTFLHDAKSQ-VIYRDFKAANILLDAEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYVAT--GRLTAKSDVYSFGVVLLELLSGRR 291          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 89/218 (40.83%), Postives = 127/218 (58.26%), Query Frame = 3
Query:   39 YTYKELKKITSRFKH--RLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQ-EFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCS-KDISIVS----LTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEM 668
            +TY EL   T  F    ++GQGGYG V++G L +   VA+K  +     G+ EF+ E+  + R+HH ++V LLGFC E   + L+YE+M NG+L   I  K       PL +    +IA G A+G+ YLH   N  I H DIK  NILLD  F  K++DFGL++L    D+  +S     T  +GT GY+ PE F  +  +++ KSDVYS G++LLE+
Sbjct:  613 FTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRDNISVKLKE----PLDFAMRLRIALGSAKGILYLHTEANPPIFHRDIKASNILLDSRFTAKVADFGLSRLAPVPDMEGISPQHVSTVVKGTPGYLDPEYFLTH--QLTDKSDVYSLGVVLLEL 824          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 95/229 (41.48%), Postives = 136/229 (59.39%), Query Frame = 3
Query:   39 YTYKELKKITSRFKHR--LGQGGYGSVFRGKLFNR----------IPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAK-LCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            +T+ ELK  T  F+    LG+GG+GSVF+G +  +          + +AVK L      G QE++ EV  +G+  H ++V+L+G+C E   R L+YEFMP GSLE  +F +   S  +PLSW    K+A G A+G+ +LH      +++ D K  NILLD  +  K+SDFGLAK   + D S VS T   GT GY APE  +   G ++ KSDVYSYG++LLE++  R+
Sbjct:   57 FTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRR--GSYFQPLSWTLRLKVALGAAKGLAFLH-NAETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVS-TRIMGTYGYAAPEYLAT--GHLTTKSDVYSYGVVLLEVLSGRR 279          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 88/225 (39.11%), Postives = 131/225 (58.22%), Query Frame = 3
Query:   39 YTYKELKKITSRF--KHRLGQGGYGSVFRGKLFNRIPVAVKM------LEHLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPL--SWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLA---KLCSKDISIVSL-TAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            +++ EL   T  F  ++++G G +G V+RGKL +   VA+K       ++  +     F +E+A + R+HH H+VRL+G+C E   + L+Y++M NG+L   +  K N   H  L  SW+   KIA   ARG+EYLH      I+H DIK  NILLD N+  ++SDFGL+    +  KD +     T A GT GYI PE +S N   ++ KSDVY  G++LLE++
Sbjct:  484 FSFSELASATGNFSLENKIGSGSFGVVYRGKLNDGREVAIKRGEVNAKMKKFQEKETAFDSEIAFLSRLHHKHLVRLVGYCEEREEKLLVYDYMKNGALYDHLHDKNNVEKHSSLINSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWVARVSDFGLSLMGPVLGKDHNPYQRPTKAAGTVGYIDPEYYSLNV--LTDKSDVYGLGVVLLELL 706          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: CRK2_ARATH (Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.036e-35
Identity = 87/216 (40.28%), Postives = 130/216 (60.19%), Query Frame = 3
Query:   33 IRYTYKELKKITSRFKH--RLGQGGYGSVFRGKLFNRIPVAVKMLE-HLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            + + Y  L+K T  F +  +LGQGG+G+V++G L +   +AVK L  + +    +F NEV  I  + H ++VRLLG    G    L+YE++ N SL++FIF      +   L W++   I  G A G+ YLH+  + +I+H DIK  NILLD   Q KI+DFGLA+    D S +S TA  GT GY+APE  +   G+++   DVYS+G+++LE+V
Sbjct:  311 LNFKYSTLEKATGSFDNANKLGQGGFGTVYKGVLPDGRDIAVKRLFFNNRHRATDFYNEVNMISTVEHKNLVRLLGCSCSGPESLLVYEYLQNKSLDRFIFDVNRGKT---LDWQRRYTIIVGTAEGLVYLHEQSSVKIIHRDIKASNILLDSKLQAKIADFGLARSFQDDKSHIS-TAIAGTLGYMAPEYLAH--GQLTEMVDVYSFGVLVLEIV 520          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.353e-35
Identity = 93/229 (40.61%), Postives = 135/229 (58.95%), Query Frame = 3
Query:   39 YTYKELKKITSRFKHR--LGQGGYGSVFRGKLFNR----------IPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCS-KDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            +++ ELK  T  F+    LG+GG+G VF+G +  +          + +AVK L      G QE++ EV  +G+  H H+V+L+G+C E   R L+YEFMP GSLE  +F +      +PLSW+   K+A G A+G+ +LH     R+++ D K  NILLD  +  K+SDFGLAK     D S VS T   GT GY APE  +   G ++ KSDVYS+G++LLE++  R+
Sbjct:   56 FSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRR--GLYFQPLSWKLRLKVALGAAKGLAFLHSS-ETRVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPIGDKSHVS-TRVMGTHGYAAPEYLAT--GHLTTKSDVYSFGVVLLELLSGRR 278          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.308e-35
Identity = 88/220 (40.00%), Postives = 131/220 (59.55%), Query Frame = 3
Query:   39 YTYKELKKITSRF--KHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRKIM 689
            + YKE++K T  F  K +LG G YG+V+RGKL N   VA+K L H       + +NE+  +  + H ++VRLLG C E     L+YE+MPNG+L + +     S     L W     +A   A+ + YLH   N  I H DIK  NILLD++F  K++DFGL++L   + S +S TA +GT GY+ P+ + + F  +S KSDVYS+G++L E++   K++
Sbjct:  336 FPYKEIEKATDGFSEKQKLGIGAYGTVYRGKLQNDEWVAIKRLRHRDSESLDQVMNEIKLLSSVSHPNLVRLLGCCIEQGDPVLVYEYMPNGTLSEHLQRDRGSG----LPWTLRLTVATQTAKAIAYLHSSMNPPIYHRDIKSTNILLDYDFNSKVADFGLSRLGMTESSHIS-TAPQGTPGYLDPQ-YHQCF-HLSDKSDVYSFGVVLAEIITGLKVV 548          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.308e-35
Identity = 81/221 (36.65%), Postives = 129/221 (58.37%), Query Frame = 3
Query:   36 RYTYKELKKITSRF--KHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRKIM 689
            R  +  +K  T+ F     +G GG+G V++G+L +   VAVK        G  EF  E+  + +  H H+V L+G+C E N   LIYE+M NG+++  ++     S    L+W++  +I  G ARG+ YLH G ++ ++H D+K  NILLD NF  K++DFGL+K   +       TA +G+ GY+ PE F R   +++ KSDVYS+G++L E++  R ++
Sbjct:  472 RIPFAAVKDATNNFDESRNIGVGGFGKVYKGELNDGTKVAVKRGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSHLYGSGLPS----LTWKQRLEICIGAARGLHYLHTGDSKPVIHRDVKSANILLDENFMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQ--QLTDKSDVYSFGVVLFEVLCARPVI 686          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.142e-35
Identity = 87/216 (40.28%), Postives = 124/216 (57.41%), Query Frame = 3
Query:   51 ELKKITSRF--KHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRP---LSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            ELK IT  F  K  +G+G YG V+ G L +    A+K L+  K   +EF+ +V+ + R+   ++V LLG+C +G  R L YE+ PNGSL   +  +      +P   LSW +  KIA G A+G+EYLH+     I+H DIK  NILL  +   KI+DF L+       + +  T   GT GY APE      G++S KSDVYS+G++LLE++  RK
Sbjct:   60 ELKDITDNFGSKALIGEGSYGRVYHGVLKSGRAAAIKKLDSSKQPDREFLAQVSMVSRLKDENVVELLGYCVDGGFRVLAYEYAPNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNILLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMT--GQLSSKSDVYSFGVVLLELLTGRK 273          
The following BLAST results are available for this feature:
BLAST of FC923270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NORK_MEDTR4.650e-3637.22Nodulation receptor kinase OS=Medicago truncatula ... [more]
APK2B_ARATH4.650e-3640.35Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
Y1684_ARATH7.932e-3640.83Probable LRR receptor-like serine/threonine-protei... [more]
APK1B_ARATH7.932e-3641.48Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
ACCR3_ARATH7.932e-3639.11Putative serine/threonine-protein kinase-like prot... [more]
CRK2_ARATH1.036e-3540.28Cysteine-rich receptor-like protein kinase 2 OS=Ar... [more]
APK1A_ARATH1.353e-3540.61Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
WAKLO_ARATH2.308e-3540.00Wall-associated receptor kinase-like 14 OS=Arabido... [more]
HERK_ARATH2.308e-3536.65Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
PTI1_SOLLC5.142e-3540.28Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]

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Properties
Property NameValue
Genbank descriptionC31702H06EF StrClemenN Citrus clementina cDNA clone C31702H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923270 ID=FC923270; Name=FC923270; organism=Citrus clementina; type=EST; length=724bp
AGTTCCTCGAAAACTACAGGACCGTCAATCCCATCCGATATACTTACAAA
GAGCTGAAGAAAATAACAAGCAGATTTAAGCACAGGCTCGGCCAGGGAGG
TTACGGAAGCGTGTTCAGAGGAAAACTCTTCAACAGAATTCCAGTTGCTG
TCAAGATGTTGGAACATTTAAAAGGAAATGGACAAGAGTTCATCAATGAA
GTGGCCACAATTGGCAGGATTCACCACTTCCACATTGTTCGGCTTCTGGG
ATTTTGCTCTGAAGGAAACAGACGTGCTCTTATTTACGAGTTTATGCCCA
ACGGATCACTTGAGAAATTCATCTTCTCAAAGACAAATAGCTCAAGTCAT
CGTCCATTGAGTTGGGAGAAGCTGAGGAAGATTGCATTTGGCGTTGCCCG
TGGAGTGGAGTACTTGCACCAAGGATGCAACCAAAGGATCCTGCACTTCG
ATATCAAGCCTCACAATATATTATTAGACCATAATTTTCAACCGAAGATT
TCAGATTTTGGGCTGGCTAAGTTGTGCTCTAAGGACATAAGCATTGTATC
TCTGACAGCTGCCAGAGGCACTGCTGGCTACATTGCACCTGAACTTTTCT
CCAGGAATTTTGGTGAGGTCTCTTACAAGTCTGATGTTTACAGTTATGGA
ATGATGCTGTTAGAGATGGTCGGATGCAGAAAAATAATGATCCTGCGGTT
GAAATTCAAGCCAATATATTTTCC
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