FC923270

Overview
NameFC923270
Unique NameFC923270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: NTRK3_PIG (NT-3 growth factor receptor OS=Sus scrofa GN=NTRK3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 63/243 (25.93%), Postives = 111/243 (45.68%), Query Frame = 3
Query:    3 FLENYRTVNPIRYTYKELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKG-------NGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSS----------SHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARG----TAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEM 668
            F + +    P  Y  + +K+     K  LG+G +G VF  + +N  P  VKML  +K          ++F  E   +  + H HIV+  G C +G+   +++E+M +G L KF+ +    +          +   L   ++  IA  +  G+ YL    +Q  +H D+   N L+  N   KI DFG+    S+D+         G       ++ PE  S  + + + +SDV+S+G++L E+
Sbjct:  517 FRQGHNCHKPDTYV-QHIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKVKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQICSGMVYL---ASQHFVHRDLATRNCLVGANLLVKIGDFGM----SRDVYSTDYYRVGGHTMLPIRWMPPE--SIMYRKFTTESDVWSFGVILWEI 749          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: KINY_DICDI (Probable serine/threonine-protein kinase kinY OS=Dictyostelium discoideum GN=kinY PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 65/220 (29.55%), Postives = 108/220 (49.09%), Query Frame = 3
Query:   87 LGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQEFI----NEVATIGRIHHFHIVRLLGFCSE-------------GNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQP---KISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRKI 686
            +G G YG V+RG LFN   VA+K +++ K    EFI     EVA +  I H +IV+ +G   E              +   ++ E++  G+L + I       + +    E   K++  +A  + YLH   ++ I+  D+K  NIL+D +  P   K+ DFG A++ +K        +  GT   +APEL      E     D++S+G++LLEM+  +K+
Sbjct:   38 IGSGAYGIVYRGTLFNS-DVAIKKIQNEKSEKNEFIKYLKREVAVLKNIQHPNIVQFIGVYYEPLASPSLVNRLLNSSSTWIVTEYIGGGNLHERI-----KDTKKDFPIELRIKLSLDIALAMAYLH---SRDIIFRDLKSKNILIDDSSSPIRGKVCDFGFARILNKKQQGNRHLSICGTDSIMAPELILGM--EYDESVDIFSFGVVLLEMILRKKV 246          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: YES_AVISY (Tyrosine-protein kinase transforming protein Yes (Fragment) OS=Avian sarcoma virus (strain Y73) GN=V-YES PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 62/207 (29.95%), Postives = 105/207 (50.72%), Query Frame = 3
Query:   51 ELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            E+ + + R + +LGQG +G V+ G       VA+K L+      + F+ E   + ++ H  +V L    SE     ++ EFM  GSL  F+         + L   +L  +A  +A G+ Y+ +      +H D++  NIL+  N   KI+DFGLA+L  +D    +   A+    + APE  +  +G  + KSDV+S+G++L E+V
Sbjct:  261 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTKVAIKTLKLGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSE-EPIYIVTEFMTKGSLLDFL----KEGEGKFLKLPQLVDMAAQIADGMAYIER---MNYIHRDLRAANILVGDNLVCKIADFGLARLI-EDNEYTARQGAKFPIKWTAPE--AALYGRFTIKSDVWSFGILLTELV 456          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: SRC_RSVSA (Tyrosine-protein kinase transforming protein Src OS=Avian leukosis virus RSA GN=V-SRC PE=1 SV=5)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 59/206 (28.64%), Postives = 106/206 (51.46%), Query Frame = 3
Query:   51 ELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEM 668
            E+ + + R + +LGQG +G V+ G       VA+K L+    + + F+ E   + ++ H  +V+L    SE     ++ E+M  GSL  F+  +       P    +L  +A  +A G+ Y+ +      +H D++  NIL+  N   K++DFGLA+L  +D    +   A+    + APE  +  +G  + KSDV+S+G++L E+
Sbjct:  261 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGEMGKYLRLP----QLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLI-EDNEYTARQGAKFPIKWTAPE--AALYGRFTIKSDVWSFGILLTEL 455          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: SRC_CHICK (Proto-oncogene tyrosine-protein kinase Src OS=Gallus gallus GN=SRC PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 59/206 (28.64%), Postives = 106/206 (51.46%), Query Frame = 3
Query:   51 ELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEM 668
            E+ + + R + +LGQG +G V+ G       VA+K L+    + + F+ E   + ++ H  +V+L    SE     ++ E+M  GSL  F+  +       P    +L  +A  +A G+ Y+ +      +H D++  NIL+  N   K++DFGLA+L  +D    +   A+    + APE  +  +G  + KSDV+S+G++L E+
Sbjct:  261 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGEMGKYLRLP----QLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLI-EDNEYTARQGAKFPIKWTAPE--AALYGRFTIKSDVWSFGILLTEL 455          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: SRC_AVIST (Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain S2) GN=V-SRC PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 59/206 (28.64%), Postives = 106/206 (51.46%), Query Frame = 3
Query:   51 ELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEM 668
            E+ + + R + +LGQG +G V+ G       VA+K L+    + + F+ E   + ++ H  +V+L    SE     ++ E+M  GSL  F+  +       P    +L  +A  +A G+ Y+ +      +H D++  NIL+  N   K++DFGLA+L  +D    +   A+    + APE  +  +G  + KSDV+S+G++L E+
Sbjct:  261 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGEMGKYLRLP----QLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLI-EDNEYTARQGAKFPIKWTAPE--AALYGRFTIKSDVWSFGILLTEL 455          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: SRC_AVISR (Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain rASV1441) GN=V-SRC PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 59/206 (28.64%), Postives = 106/206 (51.46%), Query Frame = 3
Query:   51 ELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEM 668
            E+ + + R + +LGQG +G V+ G       VA+K L+    + + F+ E   + ++ H  +V+L    SE     ++ E+M  GSL  F+  +       P    +L  +A  +A G+ Y+ +      +H D++  NIL+  N   K++DFGLA+L  +D    +   A+    + APE  +  +G  + KSDV+S+G++L E+
Sbjct:  261 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGEMGKYLRLP----QLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLI-EDNEYTARQGAKFPIKWTAPE--AALYGRFTIKSDVWSFGILLTEL 455          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: SRC_AVIS2 (Tyrosine-protein kinase transforming protein Src OS=Avian sarcoma virus (strain PR2257) GN=V-SRC PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 59/206 (28.64%), Postives = 106/206 (51.46%), Query Frame = 3
Query:   51 ELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEM 668
            E+ + + R + +LGQG +G V+ G       VA+K L+    + + F+ E   + ++ H  +V+L    SE     ++ E+M  GSL  F+  +       P    +L  +A  +A G+ Y+ +      +H D++  NIL+  N   K++DFGLA+L  +D    +   A+    + APE  +  +G  + KSDV+S+G++L E+
Sbjct:  261 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSKGSLLDFLKGEMGKYLRLP----QLVDMAAQIASGMAYVER---MNYVHRDLRAANILVGENLVCKVADFGLARLI-EDNEYTARQGAKFPIKWTAPE--AALYGRFTIKSDVWSFGILLTEL 455          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: ROR1_DROME (Tyrosine-protein kinase transmembrane receptor Ror OS=Drosophila melanogaster GN=Ror PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 62/208 (29.81%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   75 FKHRLGQGGYGSVFRGKLFN----RIPVAVKMLEHLKG--NGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAK-LCSKD---ISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEM 668
            F   LG+G +G V++G+L       I VA+K L+        Q+F  E+  I  + H +IV +LG         +++E+M NG L +F+ S + +   + LS  +  +IA  ++ G++YL        +H D+   N L++     KISDFGL++ + S D   +   SL   R    ++  E  S  +G+ + +SDV+S+G++L E+
Sbjct:  412 FLEELGEGAFGKVYKGQLLQPNKTTITVAIKALKENASVKTQQDFKREIELISDLKHQNIVCILGVVLNKEPYCMLFEYMANGDLHEFLISNSPTEG-KSLSQLEFLQIALQISEGMQYLSA---HHYVHRDLAARNCLVNEGLVVKISDFGLSRDIYSSDYYRVQSKSLLPVR----WMPSE--SILYGKFTTESDVWSFGVVLWEI 609          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: ROCO9_DICDI (Probable serine/threonine-protein kinase roco9 OS=Dictyostelium discoideum GN=roco9 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 68/226 (30.09%), Postives = 114/226 (50.44%), Query Frame = 3
Query:   21 TVNPIRYTYKELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLE-HLKGNG-----QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAG---YIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            T+N +R+   + K++     + +G+GG  +V++GK + +  VA+K+L+  + G+       E+  E+  +    H +I+ L GFC E    A+I EF   G+L  +I    N     PL W+   KIA G+A  ++ LH      ++H D+K  NILL       +       LC   +S  S T A  +     ++APE+ +      S KSDVY+YG++L E++
Sbjct: 2993 TMNDLRHKLIDFKEVELD-PNPIGEGGTATVYKGK-WRQSDVAIKLLKTDVVGSDFSKVFAEYRREIFCLSSFIHDNILDLKGFCLEP--LAIITEFQSGGNLYDYIHDLKN-----PLDWQLRIKIAKGIAASLQTLHDS-RPSVVHRDLKSPNILLSSKDSLTME----CHLCDFSLSGFSTTVANRSVQNPVWLAPEVINNEL--CSDKSDVYAYGVILFELL 3202          
The following BLAST results are available for this feature:
BLAST of FC923270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NTRK3_PIG4.525e-1525.93NT-3 growth factor receptor OS=Sus scrofa GN=NTRK3... [more]
KINY_DICDI4.525e-1529.55Probable serine/threonine-protein kinase kinY OS=D... [more]
YES_AVISY5.910e-1529.95Tyrosine-protein kinase transforming protein Yes (... [more]
SRC_RSVSA5.910e-1528.64Tyrosine-protein kinase transforming protein Src O... [more]
SRC_CHICK5.910e-1528.64Proto-oncogene tyrosine-protein kinase Src OS=Gall... [more]
SRC_AVIST5.910e-1528.64Tyrosine-protein kinase transforming protein Src O... [more]
SRC_AVISR5.910e-1528.64Tyrosine-protein kinase transforming protein Src O... [more]
SRC_AVIS25.910e-1528.64Tyrosine-protein kinase transforming protein Src O... [more]
ROR1_DROME5.910e-1529.81Tyrosine-protein kinase transmembrane receptor Ror... [more]
ROCO9_DICDI5.910e-1530.09Probable serine/threonine-protein kinase roco9 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31702H06EF StrClemenN Citrus clementina cDNA clone C31702H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923270 ID=FC923270; Name=FC923270; organism=Citrus clementina; type=EST; length=724bp
AGTTCCTCGAAAACTACAGGACCGTCAATCCCATCCGATATACTTACAAA
GAGCTGAAGAAAATAACAAGCAGATTTAAGCACAGGCTCGGCCAGGGAGG
TTACGGAAGCGTGTTCAGAGGAAAACTCTTCAACAGAATTCCAGTTGCTG
TCAAGATGTTGGAACATTTAAAAGGAAATGGACAAGAGTTCATCAATGAA
GTGGCCACAATTGGCAGGATTCACCACTTCCACATTGTTCGGCTTCTGGG
ATTTTGCTCTGAAGGAAACAGACGTGCTCTTATTTACGAGTTTATGCCCA
ACGGATCACTTGAGAAATTCATCTTCTCAAAGACAAATAGCTCAAGTCAT
CGTCCATTGAGTTGGGAGAAGCTGAGGAAGATTGCATTTGGCGTTGCCCG
TGGAGTGGAGTACTTGCACCAAGGATGCAACCAAAGGATCCTGCACTTCG
ATATCAAGCCTCACAATATATTATTAGACCATAATTTTCAACCGAAGATT
TCAGATTTTGGGCTGGCTAAGTTGTGCTCTAAGGACATAAGCATTGTATC
TCTGACAGCTGCCAGAGGCACTGCTGGCTACATTGCACCTGAACTTTTCT
CCAGGAATTTTGGTGAGGTCTCTTACAAGTCTGATGTTTACAGTTATGGA
ATGATGCTGTTAGAGATGGTCGGATGCAGAAAAATAATGATCCTGCGGTT
GAAATTCAAGCCAATATATTTTCC
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