FC923270

Overview
NameFC923270
Unique NameFC923270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 93/230 (40.43%), Postives = 143/230 (62.17%), Query Frame = 3
Query:    6 LENYRTVNPIRYTYKELKKITSRFKHR--LGQGGYGSVFRGKLFNRIP-VAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            LE++   +P R+ Y++L K T  FK    +G GG+G V+RG + +    +AVK +      G +EF+ E+ ++GR+ H ++V L G+C   N   LIY+++PNGSL+  ++SK   S    LSW    +IA G+A G+ YLH+   Q ++H D+KP N+L+D +  P++ DFGLA+L  +  S    T   GT GY+APEL +RN G  S  SDV+++G++LLE+V  RK
Sbjct:  340 LEDWEIDHPHRFRYRDLYKATEGFKENRVVGTGGFGIVYRGNIRSSSDQIAVKKITPNSMQGVREFVAEIESLGRLRHKNLVNLQGWCKHRNDLLLIYDYIPNGSLDSLLYSKPRRSG-AVLSWNARFQIAKGIASGLLYLHEEWEQIVIHRDVKPSNVLIDSDMNPRLGDFGLARLYERG-SQSCTTVVVGTIGYMAPEL-ARN-GNSSSASDVFAFGVLLLEIVSGRK 565          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 90/214 (42.06%), Postives = 131/214 (61.21%), Query Frame = 3
Query:   45 YKELKKITSRF--KHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQ-EFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAAR--GTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            ++ LK  T  F  ++ LG+GG+GSV++G       +AVK L    G G  EF NE+  + ++ H ++VRLLGFC EG  R L+YEF+ N SL+ FIF   +    + L W    K+  GVARG+ YLH+    RI+H D+K  NILLD    PKI+DFGLAKL   D +      ++  GT GY+APE     +G+ S K+DV+S+G++++E++
Sbjct:  351 FETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQERILVYEFIKNASLDNFIF---DLKKRQLLDWGVRYKMIGGVARGLLYLHEDSRYRIIHRDLKASNILLDQEMNPKIADFGLAKLYDTDQTSTHRFTSKIAGTYGYMAPEY--AIYGQFSVKTDVFSFGVLVIEII 559          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: BRL3_ARATH (Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 89/219 (40.64%), Postives = 135/219 (61.64%), Query Frame = 3
Query:   36 RYTYKELKKITSRFK--HRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            + T+  L + T+ F     +G GG+G V++ KL +   VA+K L  + G G +EF+ E+ TIG+I H ++V LLG+C  G  R L+YE+M  GSLE  +  KT       L W   +KIA G ARG+ +LH  C   I+H D+K  N+LLD +F  ++SDFG+A+L S   + +S++   GT GY+ PE + ++F   + K DVYSYG++LLE++  +K
Sbjct:  845 KLTFAHLLEATNGFSADSMIGSGGFGDVYKAKLADGSVVAIKKLIQVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMKYGSLETVLHEKTKKGGIF-LDWSARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDQDFVARVSDFGMARLVSALDTHLSVSTLAGTPGYVPPEYY-QSF-RCTAKGDVYSYGVILLELLSGKK 1060          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 85/212 (40.09%), Postives = 131/212 (61.79%), Query Frame = 3
Query:   39 YTYKELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKM-LEHLKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            +++KE+K  T  FK  +G+G +G+V+RGKL +   VAVK+  +  +     FINEV  + +I H ++V   GFC E  R+ L+YE++  GSL   ++     S    L+W    K+A   A+G++YLH G   RI+H D+K  NILLD +   K+SDFGL+K  +K  +    T  +GTAGY+ PE +S    +++ KSDVYS+G++LLE++
Sbjct:  596 FSHKEIKSATRNFKEVIGRGSFGAVYRGKLPDGKQVAVKVRFDRTQLGADSFINEVHLLSQIRHQNLVSFEGFCYEPKRQILVYEYLSGGSLADHLYGPR--SKRHSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHRDVKSSNILLDKDMNAKVSDFGLSKQFTKADASHITTVVKGTAGYLDPEYYSTL--QLTEKSDVYSFGVVLLELI 803          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: CRK31_ARATH (Putative cysteine-rich receptor-like protein kinase 31 OS=Arabidopsis thaliana GN=CRK31 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.441e-39
Identity = 91/220 (41.36%), Postives = 132/220 (60.00%), Query Frame = 3
Query:   33 IRYTYKELKKITSRFK--HRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            +++ +  ++  T  F   ++LGQGG+G V++G L N   +AVK L    G G QEF NEV  + ++ H ++VRLLGFC E + + L+YEF+ N SL+ F+F     S    L W++   I  GV RG+ YLHQ     I+H DIK  NILLD +  PKI+DFG+A+    D +        GT GY+ PE  +   G+ S KSDVYS+G+++LE+V  +K
Sbjct:  325 LQFDFTTIEVATDNFSRNNKLGQGGFGEVYKGMLPNETEIAVKRLSSNSGQGTQEFKNEVVIVAKLQHKNLVRLLGFCIERDEQILVYEFVSNKSLDYFLFDPKMKSQ---LDWKRRYNIIGGVTRGLLYLHQDSRLTIIHRDIKASNILLDADMNPKIADFGMARNFRVDQTEDQTGRVVGTFGYMPPEYVTH--GQFSTKSDVYSFGVLILEIVCGKK 539          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.494e-39
Identity = 88/228 (38.60%), Postives = 136/228 (59.65%), Query Frame = 3
Query:    9 ENYRTVNPIRYTYKELKKITSRF--KHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQ-EFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            ++  T + ++  Y+ ++  T+ F   +++G+GG+G V++G   N   VAVK L      G+ EF  EV  + ++ H ++VRLLGF  +G  R L+YE+MPN SL+  +F  T       L W +   I  G+ARG+ YLHQ     I+H D+K  NILLD +  PKI+DFG+A++   D +  + +   GT GY+APE      G+ S KSDVYS+G+++LE++  RK
Sbjct:  329 DDMATADSLQLDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLFDPTKQIQ---LDWMQRYNIIGGIARGILYLHQDSRLTIIHRDLKASNILLDADINPKIADFGMARIFGLDQTQDNTSRIVGTYGYMAPEYAMH--GQFSMKSDVYSFGVLVLEIISGRK 551          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39
Identity = 86/215 (40.00%), Postives = 137/215 (63.72%), Query Frame = 3
Query:   54 LKKITSRFK--HRLGQGGYGSVFRGKLFNRIPVAVKMLEH--LKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            L+ +T+ F   + LG GG+G V++G+L +   +AVK +E+  + G G  EF +E+A + ++ H H+V LLG+C +GN + L+YE+MP G+L + +F + +    +PL W++   +A  VARGVEYLH   +Q  +H D+KP NILL  + + K++DFGL +L  +    +  T   GT GY+APE      G V+ K DVYS+G++L+E++  RK
Sbjct:  581 LRSVTNNFSSDNILGSGGFGVVYKGELHDGTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLF-EWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIE-TRIAGTFGYLAPEYAVT--GRVTTKVDVYSFGVILMELITGRK 791          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39
Identity = 88/236 (37.29%), Postives = 144/236 (61.02%), Query Frame = 3
Query:   33 IRYTYKELKKITSRFKHR--LGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQ-EFINEVATIGRIHHFHIVRLLGFCS-----EGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRKIMILRLKFKPI 716
            +++++ E+KK T+ F     +G+GGYG+VF+G L +   VA K  ++    G   F +EV  I  I H +++ L G+C+     EG++R ++ + + NGSL   +F    +     L+W   ++IA G+ARG+ YLH G    I+H DIK  NILLD  F+ K++DFGLAK   + ++ +S T   GT GY+APE     +G+++ KSDVYS+G++LLE++  RK ++   + +P+
Sbjct:  269 VKFSFDEIKKATNNFSRHNIIGRGGYGNVFKGALPDGTQVAFKRFKNCSAGGDANFAHEVEVIASIRHVNLLALRGYCTATTPYEGHQRIIVCDLVSNGSLHDHLFGDLEAQ----LAWPLRQRIALGMARGLAYLHYGAQPSIIHRDIKASNILLDERFEAKVADFGLAKFNPEGMTHMS-TRVAGTMGYVAPEY--ALYGQLTEKSDVYSFGVVLLELLSRRKAIVTDEEGQPV 497          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: CRK41_ARATH (Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39
Identity = 89/204 (43.63%), Postives = 131/204 (64.22%), Query Frame = 3
Query:   81 HRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQ-EFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAAR--GTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            ++LG+GG+G+V++G L     +AVK L    G G  EFINEV+ + ++ H ++VRLLGFC +G  R LIYEF  N SL+ +IF   +S+    L WE   +I  GVARG+ YLH+    +I+H D+K  N+LLD    PKI+DFG+AKL   D +  +   ++  GT GY+APE      GE S K+DV+S+G+++LE++  +K
Sbjct:  348 NQLGEGGFGAVYKGVLDYGEEIAVKRLSMKSGQGDNEFINEVSLVAKLQHRNLVRLLGFCLQGEERILIYEFFKNTSLDHYIF---DSNRRMILDWETRYRIISGVARGLLYLHEDSRFKIVHRDMKASNVLLDDAMNPKIADFGMAKLFDTDQTSQTRFTSKVAGTYGYMAPEYAMS--GEFSVKTDVFSFGVLVLEIIKGKK 546          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.665e-39
Identity = 94/231 (40.69%), Postives = 145/231 (62.77%), Query Frame = 3
Query:    6 LENYRTVNPIRYTYKELKKITSRFKHR--LGQGGYGSVFRGKLFNRIP--VAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            LE++   +P R  YK+L   T  FK    +G GG+G+VFRG L +     +AVK +      G +EFI E+ ++GR+ H ++V L G+C + N   LIY+++PNGSL+  ++S+   S    LSW    KIA G+A G+ YLH+   + ++H DIKP N+L++ +  P++ DFGLA+L  +  S  + T   GT GY+APEL +RN G+ S  SDV+++G++LLE+V  R+
Sbjct:  338 LEDWEINHPHRLRYKDLYAATDGFKENRIVGTGGFGTVFRGNLSSPSSDQIAVKKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYDYIPNGSLDSLLYSRPRQSGV-VLSWNARFKIAKGIASGLLYLHEEWEKVVIHRDIKPSNVLIEDDMNPRLGDFGLARLYERG-SQSNTTVVVGTIGYMAPEL-ARN-GKSSSASDVFAFGVLLLEIVSGRR 564          
The following BLAST results are available for this feature:
BLAST of FC923270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LRKA3_ARATH2.635e-3940.43Lectin-domain containing receptor kinase A4.3 OS=A... [more]
CRK28_ARATH2.635e-3942.06Cysteine-rich receptor-like protein kinase 28 OS=A... [more]
BRL3_ARATH2.635e-3940.64Receptor-like protein kinase BRI1-like 3 OS=Arabid... [more]
Y5487_ARATH3.441e-3940.09Probable LRR receptor-like serine/threonine-protei... [more]
CRK31_ARATH3.441e-3941.36Putative cysteine-rich receptor-like protein kinas... [more]
CRK6_ARATH4.494e-3938.60Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
TMK1_ARATH5.869e-3940.00Probable receptor protein kinase TMK1 OS=Arabidops... [more]
RKF3_ARATH5.869e-3937.29Probable LRR receptor-like serine/threonine-protei... [more]
CRK41_ARATH5.869e-3943.63Cysteine-rich receptor-like protein kinase 41 OS=A... [more]
LRKA2_ARATH7.665e-3940.69Lectin-domain containing receptor kinase A4.2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31702H06EF StrClemenN Citrus clementina cDNA clone C31702H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923270 ID=FC923270; Name=FC923270; organism=Citrus clementina; type=EST; length=724bp
AGTTCCTCGAAAACTACAGGACCGTCAATCCCATCCGATATACTTACAAA
GAGCTGAAGAAAATAACAAGCAGATTTAAGCACAGGCTCGGCCAGGGAGG
TTACGGAAGCGTGTTCAGAGGAAAACTCTTCAACAGAATTCCAGTTGCTG
TCAAGATGTTGGAACATTTAAAAGGAAATGGACAAGAGTTCATCAATGAA
GTGGCCACAATTGGCAGGATTCACCACTTCCACATTGTTCGGCTTCTGGG
ATTTTGCTCTGAAGGAAACAGACGTGCTCTTATTTACGAGTTTATGCCCA
ACGGATCACTTGAGAAATTCATCTTCTCAAAGACAAATAGCTCAAGTCAT
CGTCCATTGAGTTGGGAGAAGCTGAGGAAGATTGCATTTGGCGTTGCCCG
TGGAGTGGAGTACTTGCACCAAGGATGCAACCAAAGGATCCTGCACTTCG
ATATCAAGCCTCACAATATATTATTAGACCATAATTTTCAACCGAAGATT
TCAGATTTTGGGCTGGCTAAGTTGTGCTCTAAGGACATAAGCATTGTATC
TCTGACAGCTGCCAGAGGCACTGCTGGCTACATTGCACCTGAACTTTTCT
CCAGGAATTTTGGTGAGGTCTCTTACAAGTCTGATGTTTACAGTTATGGA
ATGATGCTGTTAGAGATGGTCGGATGCAGAAAAATAATGATCCTGCGGTT
GAAATTCAAGCCAATATATTTTCC
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