FC923270

Overview
NameFC923270
Unique NameFC923270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 88/230 (38.26%), Postives = 139/230 (60.43%), Query Frame = 3
Query:   39 YTYKELKKITSRF--KHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRKIMILRLKFKPIY 719
            +T K++K+ T+ F  ++++G+GG+G V++G L + + +AVK L      G +EF+ E+  I  + H ++V+L G C EG    L+YE++ N SL + +F       H  L W    K+  G+A+G+ YLH+    +I+H DIK  N+LLD +   KISDFGLAKL  ++ + +S T   GT GY+APE   R  G ++ K+DVYS+G++ LE+V  +     R K + IY
Sbjct:  655 FTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLH--LDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHIS-TRIAGTIGYMAPEYAMR--GYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIY 879          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 88/215 (40.93%), Postives = 133/215 (61.86%), Query Frame = 3
Query:   39 YTYKELKKITSRFKHR--LGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG--QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            +T++EL   T  F  +  LG GG+G+V+RGK  +   VAVK L+ + G     +F  E+  I    H +++RL+G+C+  + R L+Y +M NGS+   + +K        L W   +KIA G ARG+ YLH+ C+ +I+H D+K  NILLD  F+  + DFGLAKL + + S V+ TA RGT G+IAPE  S   G+ S K+DV+ +G++LLE++
Sbjct:  287 FTFRELHVATDGFSSKSILGAGGFGNVYRGKFGDGTVVAVKRLKDVNGTSGNSQFRTELEMISLAVHRNLLRLIGYCASSSERLLVYPYMSNGSVASRLKAKP------ALDWNTRKKIAIGAARGLFYLHEQCDPKIIHRDVKAANILLDEYFEAVVGDFGLAKLLNHEDSHVT-TAVRGTVGHIAPEYLST--GQSSEKTDVFGFGILLLELI 492          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 87/214 (40.65%), Postives = 133/214 (62.15%), Query Frame = 3
Query:   39 YTYKELKKITSRFK--HRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            +T +++K  T  F    ++G+GG+GSV++G+L     +AVK L      G +EF+NE+  I  + H ++V+L G C EGN+  L+YE++ N  L + +F K + SS   L W   +KI  G+A+G+ +LH+    +I+H DIK  N+LLD +   KISDFGLAKL     + +S T   GT GY+APE   R  G ++ K+DVYS+G++ LE+V
Sbjct:  666 FTLRQIKAATDNFDVTRKIGEGGFGSVYKGELSEGKLIAVKQLSAKSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCLSRALFGK-DESSRLKLDWSTRKKIFLGIAKGLTFLHEESRIKIVHRDIKASNVLLDKDLNAKISDFGLAKLNDDGNTHIS-TRIAGTIGYMAPEYAMR--GYLTEKADVYSFGVVALEIV 875          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: CRK29_ARATH (Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 87/214 (40.65%), Postives = 132/214 (61.68%), Query Frame = 3
Query:   45 YKELKKITSRF--KHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQ-EFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAAR--GTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            ++ LK  T  F  ++ LG+GG+GSV++G       +AVK L    G G  EF NE+  + ++ H ++VRL+GFC +G  R L+YEF+ N SL++FIF   ++   + L W    K+  G+ARG+ YLH+    RI+H D+K  NILLD    PKI+DFGLAKL     ++     +R  GT GY+APE      G+ S K+DV+S+G++++E++
Sbjct:  347 FETLKTATDNFSSENELGRGGFGSVYKGVFPQGQEIAVKRLSGNSGQGDNEFKNEILLLAKLQHRNLVRLIGFCIQGEERLLVYEFIKNASLDQFIF---DTEKRQLLDWVVRYKMIGGIARGLLYLHEDSRFRIIHRDLKASNILLDQEMNPKIADFGLAKLFDSGQTMTHRFTSRIAGTYGYMAPEYAMH--GQFSVKTDVFSFGVLVIEII 555          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.969e-38
Identity = 88/230 (38.26%), Postives = 138/230 (60.00%), Query Frame = 3
Query:   39 YTYKELKKITSRF--KHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRKIMILRLKFKPIY 719
            +T K++K+ T+ F  ++++G+GG+G V++G L + + +AVK L      G +EF+ E+  I  + H ++V+L G C EG    L+YE++ N SL + +F       H  L W    KI  G+A+G+ YLH+    +I+H DIK  N+LLD +   KISDFGLAKL   + + +S T   GT GY+APE   R  G ++ K+DVYS+G++ LE+V  +     R K + +Y
Sbjct:  657 FTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLH--LDWSTRNKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLNDDENTHIS-TRIAGTIGYMAPEYAMR--GYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFVY 881          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.969e-38
Identity = 96/221 (43.44%), Postives = 137/221 (61.99%), Query Frame = 3
Query:   39 YTYKELKKITSRFKHR--LGQGGYGSVFRGKLFNRIPV-AVKMLEH--LKGNGQEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKL-CSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCRK 683
            + ++EL   T  F     LG+GG+G V++G+L +   V AVK L+   L+GN +EF+ EV  +  +HH ++V L+G+C++G++R L+YEFMP GSLE  +           L W    KIA G A+G+E+LH   N  +++ D K  NILLD  F PK+SDFGLAKL  + D S VS T   GT GY APE      G+++ KSDVYS+G++ LE++  RK
Sbjct:   74 FAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGN-REFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKE--ALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVS-TRVMGTYGYCAPEYAMT--GQLTVKSDVYSFGVVFLELITGRK 288          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.489e-38
Identity = 92/224 (41.07%), Postives = 132/224 (58.93%), Query Frame = 3
Query:   39 YTYKELKKITSRFKH--RLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNGQ-EFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVS----LTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLE-MVGCRKI 686
            Y + EL   TS F    ++G+GGYG V++G L   + VAVK  E     GQ EF  E+  + R+HH ++V LLG+C +   + L+YE+MPNGSL+  + ++      +PLS     +IA G ARG+ YLH   +  I+H DIKP NILLD    PK++DFG++KL + D   V      T  +GT GY+ PE +  +   ++ KSDVYS G++ LE + G R I
Sbjct:  619 YNFTELDSATSSFSDLSQIGRGGYGKVYKGHLPGGLVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSARFR----QPLSLALRLRIALGSARGILYLHTEADPPIIHRDIKPSNILLDSKMNPKVADFGISKLIALDGGGVQRDHVTTIVKGTPGYVDPEYYLSH--RLTEKSDVYSLGIVFLEILTGMRPI 836          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.489e-38
Identity = 87/221 (39.37%), Postives = 134/221 (60.63%), Query Frame = 3
Query:   33 IRYTYKELKKITSRFKHRL--GQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKL--CSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMVGCR 680
            +R ++ EL+  T+ F   L  G GG+G VFRG L +   VAVK        G  EF++E+  + +I H H+V L+G+C E +   L+YE+M  G L+  ++  TN     PLSW++  ++  G ARG+ YLH G +Q I+H DIK  NILLD+N+  K++DFGL++   C  +  +   T  +G+ GY+ PE F R   +++ KSDVYS+G++L E++  R
Sbjct:  475 LRISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDNTKVAVKRGSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYGSTNP----PLSWKQRLEVCIGAARGLHYLHTGSSQGIIHRDIKSTNILLDNNYVAKVADFGLSRSGPCIDETHV--STGVKGSFGYLDPEYFRRQ--QLTDKSDVYSFGVVLFEVLCAR 687          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: SIRK_ARATH (Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.107e-37
Identity = 86/212 (40.57%), Postives = 131/212 (61.79%), Query Frame = 3
Query:   39 YTYKELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            + Y E+  IT+ F+  +G+GG+G V+ G + N   VAVK+L      G +EF  EV  + R+HH ++  L+G+C+E N   LIYE+M N +L  ++  K +      LSWE+  KI+   A+G+EYLH GC   I+H D+KP NILL+   Q K++DFGL++  S + S    T   G+ GY+ PE +S    +++ KSDVYS G++LLE++
Sbjct:  564 FKYSEVVNITNNFERVIGKGGFGKVYHG-VINGEQVAVKVLSEESAQGYKEFRAEVDLLMRVHHTNLTSLVGYCNEINHMVLIYEYMANENLGDYLAGKRSFI----LSWEERLKISLDAAQGLEYLHNGCKPPIVHRDVKPTNILLNEKLQAKMADFGLSRSFSVEGSGQISTVVAGSIGYLDPEYYSTR--QMNEKSDVYSLGVVLLEVI 768          
BLAST of FC923270 vs. ExPASy Swiss-Prot
Match: Y5169_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.446e-37
Identity = 88/213 (41.31%), Postives = 127/213 (59.62%), Query Frame = 3
Query:   36 RYTYKELKKITSRFKHRLGQGGYGSVFRGKLFNRIPVAVKMLEHLKGNG-QEFINEVATIGRIHHFHIVRLLGFCSEGNRRALIYEFMPNGSLEKFIFSKTNSSSHRPLSWEKLRKIAFGVARGVEYLHQGCNQRILHFDIKPHNILLDHNFQPKISDFGLAKLCSKDISIVSLTAARGTAGYIAPELFSRNFGEVSYKSDVYSYGMMLLEMV 671
            R TY E+  +T+ F+  +G+GG+G V+ G L +   VAVK+L      G +EF  EV  + R+HH ++V L+G+C E    ALIYE+M NG L+  +  K        L WE    IA   A G+EYLH GC   ++H D+K  NILLD +FQ K++DFGL++  S        T   GT GY+ PE + R +  ++ KSDVYS+G++LLE++
Sbjct:  562 RITYSEILLMTNNFERVIGEGGFGVVYHGYLNDSEQVAVKVLSPSSSQGYKEFKAEVELLLRVHHINLVSLVGYCDEQAHLALIYEYMANGDLKSHLSGKHGDCV---LKWENRLSIAVETALGLEYLHSGCKPLMVHRDVKSMNILLDEHFQAKLADFGLSRSFSVGEESHVSTGVVGTPGYLDPEYY-RTY-RLTEKSDVYSFGIVLLEII 769          
The following BLAST results are available for this feature:
BLAST of FC923270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y5344_ARATH2.913e-3838.26Probable LRR receptor-like serine/threonine-protei... [more]
Y2239_ARATH2.913e-3840.93Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH2.913e-3840.65Probable LRR receptor-like serine/threonine-protei... [more]
CRK29_ARATH2.913e-3840.65Cysteine-rich receptor-like protein kinase 29 OS=A... [more]
Y5343_ARATH4.969e-3838.26Probable LRR receptor-like serine/threonine-protei... [more]
PBS1_ARATH4.969e-3843.44Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
Y5374_ARATH6.489e-3841.07Probable LRR receptor-like serine/threonine-protei... [more]
Y5241_ARATH6.489e-3839.37Probable receptor-like protein kinase At5g24010 OS... [more]
SIRK_ARATH1.107e-3740.57Senescence-induced receptor-like serine/threonine-... [more]
Y5169_ARATH1.446e-3741.31Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC31702H06EF StrClemenN Citrus clementina cDNA clone C31702H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923270 ID=FC923270; Name=FC923270; organism=Citrus clementina; type=EST; length=724bp
AGTTCCTCGAAAACTACAGGACCGTCAATCCCATCCGATATACTTACAAA
GAGCTGAAGAAAATAACAAGCAGATTTAAGCACAGGCTCGGCCAGGGAGG
TTACGGAAGCGTGTTCAGAGGAAAACTCTTCAACAGAATTCCAGTTGCTG
TCAAGATGTTGGAACATTTAAAAGGAAATGGACAAGAGTTCATCAATGAA
GTGGCCACAATTGGCAGGATTCACCACTTCCACATTGTTCGGCTTCTGGG
ATTTTGCTCTGAAGGAAACAGACGTGCTCTTATTTACGAGTTTATGCCCA
ACGGATCACTTGAGAAATTCATCTTCTCAAAGACAAATAGCTCAAGTCAT
CGTCCATTGAGTTGGGAGAAGCTGAGGAAGATTGCATTTGGCGTTGCCCG
TGGAGTGGAGTACTTGCACCAAGGATGCAACCAAAGGATCCTGCACTTCG
ATATCAAGCCTCACAATATATTATTAGACCATAATTTTCAACCGAAGATT
TCAGATTTTGGGCTGGCTAAGTTGTGCTCTAAGGACATAAGCATTGTATC
TCTGACAGCTGCCAGAGGCACTGCTGGCTACATTGCACCTGAACTTTTCT
CCAGGAATTTTGGTGAGGTCTCTTACAAGTCTGATGTTTACAGTTATGGA
ATGATGCTGTTAGAGATGGTCGGATGCAGAAAAATAATGATCCTGCGGTT
GAAATTCAAGCCAATATATTTTCC
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