FC923279

Overview
NameFC923279
Unique NameFC923279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_PROMP (Dihydrodipicolinate reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dapB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.483e-20
Identity = 65/200 (32.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:    4 SRGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS----KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLG--EDGVRVHSMVLPRL 576
            S   E+  AID++    GE+I  + ++++  ++ V +DL   L SISQ     K + V++DFT   +VY+N + A A+G+  VV    +    ++ L+ F  KA++GC I P  S+G +LLQQAA  A+  Y N+E++E   N + D PS    + A  +    + YN+  +      +G   G  + G+ +HS+ LP L
Sbjct:   31 SSDCELVAAIDTNKKNNGENISQLLNLKKS-DVLVSNDLEGSLCSISQDYRNEKIKPVLVDFTHPDSVYENTRSAIAYGISPVVGTTGLTPSQINDLAIFAQKANIGCAIIPNFSVGMVLLQQAASVAAKFYDNIELIEMHHNQKADSPSGTCIKTAEMIEEYPKKYNQSLVEESESLKGVRGGVRDSGLNIHSIRLPGL 229          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_SYNSC (Dihydrodipicolinate reductase OS=Synechococcus sp. (strain CC9605) GN=dapB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.361e-20
Identity = 65/195 (33.33%), Postives = 107/195 (54.87%), Query Frame = 1
Query:   19 VAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK----ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLG--EDGVRVHSMVLPRL 576
            + GAID+     G D+G+   + + LE+ V +D    L ++SQS     + AV++DFT  S VY++ + A A+G+  V+    +  E ++ L+ F  KAS+G  + P  S+G +LLQQAA +A+  Y + E+ E   N + D PS    + A  +  LG+ +N E++       G   G  + G+R+HS+ LP L
Sbjct:   32 LVGAIDNTPGKEGADVGLELGLGE-LEVAVTADFEGCLCAVSQSVRDSGSGAVLVDFTHPSVVYEHTRAAIAYGVHPVIGTTGLSPEQLNDLTEFSAKASVGGAVIPNFSVGMVLLQQAAAAAARFYDHAELTELHHNRKADAPSGTCIKTAELMEELGKSFNPEEVDEHESLAGCRGGQRDSGLRLHSVRLPGL 225          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_SYNS9 (Dihydrodipicolinate reductase OS=Synechococcus sp. (strain CC9902) GN=dapB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.039e-18
Identity = 61/196 (31.12%), Postives = 105/196 (53.57%), Query Frame = 1
Query:   16 EVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQS----KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLG--EDGVRVHSMVLPRL 576
            ++ GAID+     G D+G+   +++ LE+ V +D    L ++SQS       AV++DFT  S V+D+ + A A+G+  V+    +    ++ L+ F  KAS+G  + P  S+G +LLQQAA +A+  Y + E+ E   N + D PS    + A  +  + Q +N  ++      +G   G  + G+ +HS+ LP L
Sbjct:   31 QLVGAIDNTPGKEGTDVGLELGIKE-LEVAVTADFEGCLCAVSQSVRNSDQNAVLVDFTHPSVVFDHTRAAIAYGVHPVIGTTGLSPIQLNDLTEFSAKASIGGAVIPNFSVGMVLLQQAAAAAARFYDHAELTELHHNRKADAPSGTCIKTAELMEEVKQSFNPAEVDEHESLQGSRGGVRDSGLNLHSLRLPGL 225          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_PROMT (Dihydrodipicolinate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=dapB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.039e-18
Identity = 63/202 (31.19%), Postives = 104/202 (51.49%), Query Frame = 1
Query:    4 SRGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR------AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGE--DGVRVHSMVLPRL 576
            S+  ++ GAID+     G+DIG +  + + L++ + SD    L + SQ+  +      AV++DFT     Y + + + A+G+  V+    I  + +  LS F DKAS+G  I P  S+G +LLQQAA +A+  Y+  E+ E   N + D PS    + A  +      +NR  +  +   +G   G    G+R+HS+ LP L
Sbjct:   30 SKDFQLVGAIDNQKDKEGQDIGSLLGLGE-LDVFLSSDFEGSLCAASQNVPKDGSNNGAVLVDFTHPKFAYKHTRTSIAYGVHPVIGTTGITADQLDDLSKFADKASLGSAIIPNFSVGMVLLQQAAAAAARFYEFAELTEMHHNKKADAPSGTCIKTAELIEEQRSNFNRSFVEEEESIKGSRGGSRASGLRLHSVRLPGL 230          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_LISMH (Dihydrodipicolinate reductase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dapB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.588e-14
Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   13 MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            +E+   +D     ++I  + +    L++PV  +L+ +L  I        V+DFT     Y N K     G+R+VV       E +S L +  +   +G LIAP  ++G++L+ Q A  A+ ++ NVEI+E    N  D PS  A + A  ++   +   +   +++     ARG     +G+R+HS+ LP L
Sbjct:   26 LELVAVLDHEPKEKNINEIVEFSS-LDVPVFGNLSEMLEEIKPD----CVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRSIAESKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAPSGTAVKTAEMMAETREFVKQGAADEVELIEGARGSEY--EGMRIHSVRLPGL 210          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_LISMF (Dihydrodipicolinate reductase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dapB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.074e-14
Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   13 MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            +E+   +D     ++I  + +    L++PV  +L+ +L  I        V+DFT     Y N K     G+R+VV       E +S L +  +   +G LIAP  ++G++L+ Q A  A+ ++ NVEI+E    N  D PS  A + A  ++   +   +   +++     ARG     +G+R+HS+ LP L
Sbjct:   26 LELVAVLDHEPKEKNINEIVEFSS-LDVPVFGNLSEMLEEIKPD----CVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRSIAESKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAPSGTAVKTAEMMAETREFVKQGAADEVELIEGARGAEY--EGMRIHSVRLPGL 210          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_LISMC (Dihydrodipicolinate reductase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=dapB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.074e-14
Identity = 54/192 (28.12%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   13 MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            +E+   +D     ++I  + +    L++PV  +L+ +L  I        V+DFT     Y N K     G+R+VV       E +S L +  +   +G LIAP  ++G++L+ Q A  A+ ++ NVEI+E    N  D PS  A + A  ++   +   +   +++     ARG     +G+R+HS+ LP L
Sbjct:   26 LELVAVLDHEPKEKNINEIVEFSS-LDVPVFGNLSEMLEEIKPD----CVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRSIAESKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAPSGTAVKTAEMMTETREFVKQGAADEVELIEGARGAEY--EGMRIHSVRLPGL 210          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_LISIN (Dihydrodipicolinate reductase OS=Listeria innocua GN=dapB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.621e-14
Identity = 56/193 (29.02%), Postives = 95/193 (49.22%), Query Frame = 1
Query:   13 MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGE-DGVRVHSMVLPRL 576
            +E+   +D     ++I  + +    L++PV  DL+ +L  I        V+DFT     Y N K      +R+VV       E +S L +  +   +G LIAP  ++G++L+ Q A  A+ ++ NVEI+E    N  D PS  A + A  ++   +   +   +++     ARG   GE +G+R+HS+ LP L
Sbjct:   26 LELVAVLDHEPKEKNIREIVEFSS-LDVPVYGDLSEMLEEIKPD----CVVDFTIPKVGYSNTKTILEHSVRAVVGTTGFTPEQISELKSIAESKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAPSGTAVKTAEMMAETREFVKQGAADEVELIEGARG---GEYEGMRIHSVRLPGL 210          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_LISMO (Dihydrodipicolinate reductase OS=Listeria monocytogenes GN=dapB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.345e-13
Identity = 53/192 (27.60%), Postives = 92/192 (47.92%), Query Frame = 1
Query:   13 MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            +E+   +D     ++I  + +    L++PV  +L+ +L  I        V+DFT     Y N K     G+R+VV       E +S L    +   +G LIAP  ++G++L+ Q A  A+ ++ NVEI+E    N  D PS    + A  ++   +   +   +++     ARG     +G+R+HS+ LP L
Sbjct:   26 LELVAVLDHEPKEKNINEMVEFSS-LDVPVFGNLSEMLEEIKPD----CVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTPEQISELRTIAESKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAPSGTGVKTAEMMAETREFVKQGAADEVELIEGARGAEY--EGMRIHSVRLPGL 210          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_COXBU (Dihydrodipicolinate reductase OS=Coxiella burnetii GN=dapB PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 51/176 (28.98%), Postives = 91/176 (51.70%), Query Frame = 1
Query:   94 IPVMSDLTMVLGS--------ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPRLPSSTTV 594
            I   SDL +V G+          Q+    VVIDFT   +V+ N +     G R V+    + LE ++ L   C    +G ++AP  S+G++L+ + A  A+ ++ +VEI+E   + + D PS  A + A  +  +    +++D     +ARG++  ++G+ +HS+ LP L S  +V
Sbjct:   22 ITAQSDLELVSGTGRQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTGLTLEQIALLDKQCRNKKLGAIVAPNFSVGAVLMMKYAKEAAHYFPDVEIIEMHHSQKIDAPSGTAIKTAQMIGEMRS--SKKDEPFKDRARGEI--KNGIPIHSIRLPGLFSHQSV 193          
The following BLAST results are available for this feature:
BLAST of FC923279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DAPB_PROMP1.483e-2032.50Dihydrodipicolinate reductase OS=Prochlorococcus m... [more]
DAPB_SYNSC7.361e-2033.33Dihydrodipicolinate reductase OS=Synechococcus sp.... [more]
DAPB_SYNS94.039e-1831.12Dihydrodipicolinate reductase OS=Synechococcus sp.... [more]
DAPB_PROMT4.039e-1831.19Dihydrodipicolinate reductase OS=Prochlorococcus m... [more]
DAPB_LISMH1.588e-1428.13Dihydrodipicolinate reductase OS=Listeria monocyto... [more]
DAPB_LISMF2.074e-1428.13Dihydrodipicolinate reductase OS=Listeria monocyto... [more]
DAPB_LISMC2.074e-1428.13Dihydrodipicolinate reductase OS=Listeria monocyto... [more]
DAPB_LISIN4.621e-1429.02Dihydrodipicolinate reductase OS=Listeria innocua ... [more]
DAPB_LISMO1.345e-1327.60Dihydrodipicolinate reductase OS=Listeria monocyto... [more]
DAPB_COXBU2.995e-1328.98Dihydrodipicolinate reductase OS=Coxiella burnetii... [more]

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Properties
Property NameValue
Genbank descriptionC31703A10EF StrClemenN Citrus clementina cDNA clone C31703A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923279 ID=FC923279; Name=FC923279; organism=Citrus clementina; type=EST; length=597bp
GAAAGCAGAGGGATGGAGGTTGCTGGCGCCATCGATTCCCATTCTGTAGG
AGAAGATATTGGAATGGTGTGTGATATGGAGCAGCCTCTGGAAATTCCTG
TAATGAGTGACCTCACAATGGTATTAGGTTCCATATCTCAGTCAAAAGCA
AGAGCAGTCGTCATTGATTTCACAGATGCTTCAACAGTTTATGACAATGT
GAAACAGGCAACAGCATTTGGAATGAGAAGCGTGGTTTACGTGCCACACA
TTCAGCTGGAGACAGTTTCAGCATTATCTGCATTCTGTGACAAGGCCAGC
ATGGGATGTCTTATTGCACCAACTCTCTCAATAGGATCTATTCTTCTCCA
GCAAGCCGCCATTTCTGCCTCCTTCCACTACAAGAATGTGGAAATTGTAG
AATCAAGGCCAAATGCAAGAGATTTTCCATCACCAGATGCAACTCAAATC
GCCAACAACCTCTCCAACCTTGGTCAGATCTACAACAGAGAAGATATTTC
AACAGACGTGAAAGCAAGGGGTCAAGTCCTGGGAGAAGATGGAGTTCGTG
TGCACAGTATGGTCCTTCCAAGGCTTCCATCTAGTACAACGGTTTAC
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