FC923279

Overview
NameFC923279
Unique NameFC923279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_CARHZ (Dihydrodipicolinate reductase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dapB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 54/193 (27.98%), Postives = 98/193 (50.78%), Query Frame = 1
Query:   16 EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGE-----DGVRVHSMVLPRL 576
            E+ G +D  +VG+D G +  + + L   V  +L  V+   +      +V+DF+ AS  + N+  A    +R V        E +  +    +  ++GC+IAP  SIG++LL + A  A+ ++ +VEI+E   N + D PS  A + A  LS++     RE+  + ++   ++ G       G+++HS+ LP L
Sbjct:   28 ELVGFVDVVNVGQDFGEILGISR-LGKTVEDNLKEVILKTNPE----IVLDFSRASGAFTNILIALENKVRVVSGTTGFSQEQIKKIEDVSNANNLGCIIAPNFSIGALLLMKLAQMAAKYFSHVEIIEYHHNLKVDAPSGTAIKTAELLSSI-----RENQPSAIQEEEKIPGSRGGDYRGIKIHSVRLPGL 210          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_LYSSC (Dihydrodipicolinate reductase OS=Lysinibacillus sphaericus (strain C3-41) GN=dapB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 51/192 (26.56%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   13 MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNAR-DFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            ME+   +D   VG+ +  +        +P+ +++  ++ + S      V++D T+  +VY++ K+A    +R V+         +  LS    +  +GC+IAP  +IG+IL+ + A  A+ +  +VEI+E   + + D PS  A + A  +        +   E+  T   ARG     DG+R+HS+ LP L
Sbjct:   28 MELVAVLDYKEVGKTLADLDMFPASYTVPIFTEMHDLVEATSPD----VLVDLTNPHSVYNHTKEALNLNVRPVIGTTGFTDAQLEELSTIAKEKELGCIIAPNFAIGAILMMKFAKEAAKYLPDVEIIEMHHDHKLDAPSGTAVKTAQLIQEARTQKTQGHPEEKETIEGARGGDF--DGMRIHSVRLPGL 213          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_ENTFA (Dihydrodipicolinate reductase OS=Enterococcus faecalis GN=dapB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 58/196 (29.59%), Postives = 88/196 (44.90%), Query Frame = 1
Query:    1 ESRGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIY---NREDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            E+   E+ G  D H   E +           IPV   L  VL          V IDFT     Y N + A   GM  VV       E ++ L+    + ++G LIAP  +IG++L+ Q A  A+ ++ +VEI+E    N  D PS  A + A  +  +       N +++ +   ARG     +G+R+HS+ LP L
Sbjct:   23 ETADFELVGVYDPHEAQETVSF----NDETAIPVFQRLEEVLAVKPD-----VWIDFTVPEAAYPNTRFALEHGMAPVVGTTGFTEEQINELTNLSREKAIGGLIAPNFAIGAVLMMQFAQKAAQYFPDVEIIELHHDNKLDAPSGTAIKTAEMIQEVRPAKKQGNPQEVESIPGARGADF--EGLRIHSVRLPGL 207          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_STRSY (Dihydrodipicolinate reductase OS=Streptococcus suis (strain 05ZYH33) GN=dapB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  157 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            V +DFT     Y+N + A   G   VV       E +  L+A   +  +G LIAP  +IG+ILL Q A  A+ ++ N+EI+E      +D PS  A + A  +S + Q   +   ++      ARG     DG R+HS+ LP L
Sbjct:   62 VWVDFTTPKFTYENTRFALENGFAPVVGTTGFTPEEIEELTALSAEKGLGGLIAPNFAIGAILLMQFAAQAAKYFPNLEIIELHHDKKKDAPSGTAVKTAELISQVRQSQTQGAADEEELIAGARGAAF--DGFRIHSVRLPGL 203          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_STRS2 (Dihydrodipicolinate reductase OS=Streptococcus suis (strain 98HAH33) GN=dapB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 48/144 (33.33%), Postives = 71/144 (49.31%), Query Frame = 1
Query:  157 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNR---EDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            V +DFT     Y+N + A   G   VV       E +  L+A   +  +G LIAP  +IG+ILL Q A  A+ ++ N+EI+E      +D PS  A + A  +S + Q   +   ++      ARG     DG R+HS+ LP L
Sbjct:   62 VWVDFTTPKFTYENTRFALENGFAPVVGTTGFTPEEIEELTALSAEKGLGGLIAPNFAIGAILLMQFAAQAAKYFPNLEIIELHHDKKKDAPSGTAVKTAELISQVRQSQTQGAADEEELIAGARGAAF--DGFRIHSVRLPGL 203          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_STRP4 (Dihydrodipicolinate reductase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=dapB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 49/164 (29.88%), Postives = 79/164 (48.17%), Query Frame = 1
Query:   91 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQ-IYNREDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            +IPV  D   + G  +      V +DFT  +  Y+N + A   G   VV       E ++ L  F     +G LIAP  ++G++LL Q A  A+ ++ NVEI+E      +D PS  A + A  ++ + + I        ++ A  +    DG+R+HS+ LP L
Sbjct:   45 DIPVFKDKADLAGFEAD-----VWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSRAQDLGGLIAPNFALGAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAEVRESIQQGAADEEELIAGARGADFDGMRIHSVRLPGL 203          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_PROAC (Dihydrodipicolinate reductase OS=Propionibacterium acnes GN=dapB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 50/154 (32.47%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  127 GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL-SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQIYNREDISTDVK-----ARGQVLGEDGVRVHSMVL 567
            G  S +    V++DFT    V DN+  A +  + +VV       E    L     D  ++GCL+AP  SIG++L+   A  A+  Y++ EIVE   PN  D PS  A   A  ++   Q     ++    K     ARG V+  +GV VHS+ L
Sbjct:   37 GDRSDASGADVIVDFTTPDAVMDNLSWAISHDINTVVGTTGFDDERYQVLRDQLADHPNIGCLVAPNFSIGAVLMMHFAEQAARFYESAEIVELHHPNKVDAPSGTARTTATKIAAARQEAGLGEVPDATKSQLNGARGAVV--EGVHVHSVRL 188          
BLAST of FC923279 vs. ExPASy Swiss-Prot
Match: DAPB_STRPS (Dihydrodipicolinate reductase OS=Streptococcus pneumoniae (strain CGSP14) GN=dapB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 50/163 (30.67%), Postives = 78/163 (47.85%), Query Frame = 1
Query:   94 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNLGQ-IYNREDISTDVKARGQVLGEDGVRVHSMVLPRL 576
            IPV  D   + G  +      V IDFT  +  Y+N + A   G   VV       E ++ L  F     +G LIAP  ++G++LL Q A  A+ ++ NVEI+E      +D PS  A + A  ++ + + I        ++ A  +    DG+R+HS+ LP L
Sbjct:   46 IPVFKDKADLAGFEAD-----VWIDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSRAQDLGGLIAPNFALGAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAEVRESIQQGAADEEELIAGARGADFDGMRIHSVRLPGL 203          
The following BLAST results are available for this feature:
BLAST of FC923279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DAPB_CARHZ1.258e-1127.98Dihydrodipicolinate reductase OS=Carboxydothermus ... [more]
DAPB_LYSSC1.644e-1126.56Dihydrodipicolinate reductase OS=Lysinibacillus sp... [more]
DAPB_ENTFA1.644e-1129.59Dihydrodipicolinate reductase OS=Enterococcus faec... [more]
DAPB_STRSY4.782e-1133.33Dihydrodipicolinate reductase OS=Streptococcus sui... [more]
DAPB_STRS24.782e-1133.33Dihydrodipicolinate reductase OS=Streptococcus sui... [more]
DAPB_STRP46.246e-1129.88Dihydrodipicolinate reductase OS=Streptococcus pne... [more]
DAPB_PROAC6.246e-1132.47Dihydrodipicolinate reductase OS=Propionibacterium... [more]
DAPB_STRPS8.157e-1130.67Dihydrodipicolinate reductase OS=Streptococcus pne... [more]

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Properties
Property NameValue
Genbank descriptionC31703A10EF StrClemenN Citrus clementina cDNA clone C31703A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923279 ID=FC923279; Name=FC923279; organism=Citrus clementina; type=EST; length=597bp
GAAAGCAGAGGGATGGAGGTTGCTGGCGCCATCGATTCCCATTCTGTAGG
AGAAGATATTGGAATGGTGTGTGATATGGAGCAGCCTCTGGAAATTCCTG
TAATGAGTGACCTCACAATGGTATTAGGTTCCATATCTCAGTCAAAAGCA
AGAGCAGTCGTCATTGATTTCACAGATGCTTCAACAGTTTATGACAATGT
GAAACAGGCAACAGCATTTGGAATGAGAAGCGTGGTTTACGTGCCACACA
TTCAGCTGGAGACAGTTTCAGCATTATCTGCATTCTGTGACAAGGCCAGC
ATGGGATGTCTTATTGCACCAACTCTCTCAATAGGATCTATTCTTCTCCA
GCAAGCCGCCATTTCTGCCTCCTTCCACTACAAGAATGTGGAAATTGTAG
AATCAAGGCCAAATGCAAGAGATTTTCCATCACCAGATGCAACTCAAATC
GCCAACAACCTCTCCAACCTTGGTCAGATCTACAACAGAGAAGATATTTC
AACAGACGTGAAAGCAAGGGGTCAAGTCCTGGGAGAAGATGGAGTTCGTG
TGCACAGTATGGTCCTTCCAAGGCTTCCATCTAGTACAACGGTTTAC
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