FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2
Query:  386 KMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            K+ RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+++FS RG+L E+A++S++ TIERY K   D+ N    +E N Q+ + E
Sbjct:   16 KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQE 109          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  386 KMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            K+ RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E+A++S++ TIERY K   D+ N     E N Q+ + E
Sbjct:   16 KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQE 109          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.335e-25
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  386 KMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            K+ RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA++IFS RG+L E+A++S++ TIERY K   D  N    TE N Q+ + E
Sbjct:   15 KIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQE 108          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 56/94 (59.57%), Postives = 74/94 (78.72%), Query Frame = 2
Query:  386 KMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            K+ RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E+A++S++ TIERY K   D+ N +  +E N Q  + E
Sbjct:   16 KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQE 109          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 2
Query:  386 KMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            K  RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E++++S++ TIERY K   D  N     E N Q+ + E
Sbjct:   16 KAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQE 109          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 2
Query:  386 KMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            K  RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E++++S++ TIERY K   D  N     E N Q+ + E
Sbjct:   16 KSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQE 109          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.032e-23
Identity = 54/93 (58.06%), Postives = 73/93 (78.49%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            M RGK +++RIEN+T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E+A+++++ TIERY K   D+ N +   E N  + + E
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQE 93          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.542e-22
Identity = 54/93 (58.06%), Postives = 70/93 (75.27%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQNMQHLKHE 667
            M RGK +++RIENA SRQVTFSKRR+GLLKKA ELSVLCDAEVAVI+FS  GKL E++S+ M++T+ RY  H   + +KA+     +  LK +
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRYGNHQSSSASKAEEDCAEVDILKDQ 93          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK--HTKDTRNKAQPTEQN 646
            M RG+ +M+RIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S  ++ TIERY +  +   + NK + T Q+
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNRCYNCSLSNNKPEETTQS 88          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRNKAQPTEQNMQH 655
            M RGK  ++RIEN  SRQVTF+KRRNGLLKKA+ELS+LCDAEVA+++FS  G+L +F+SSS M +T+ERY ++   +++ A PT   MQ+
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQN 90          
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AG_SOLLC5.473e-2558.51Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PETHY5.473e-2559.57Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AGL5_ARATH9.335e-2560.64Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AG_PANGI1.219e-2459.57Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_BRANA6.051e-2458.51Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH6.051e-2458.51Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL11_ARATH1.032e-2358.06Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AGL15_ARATH2.542e-2258.06Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
AGL6_ARATH5.663e-2262.50Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
MAD34_ORYSJ1.262e-2157.78MADS-box transcription factor 34 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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