FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYNE 74
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74
[Close]
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTK 610
            M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M + + +Y ++ +
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 74
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MEF2C_PONAB2.157e-1348.65Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG2.157e-1348.65Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]
MEF2C_MOUSE2.157e-1348.65Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN2.157e-1348.65Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN2.157e-1348.65Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA2.157e-1348.65Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT2.157e-1348.65Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PONAB2.157e-1348.65Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_PIG2.157e-1348.65Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_MOUSE2.157e-1348.65Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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