FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERY 595
            M RG+ +++RIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S+ + +T+E+Y
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKY 69          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.178e-21
Identity = 52/72 (72.22%), Postives = 63/72 (87.50%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEF-ASSSMQETIERYLK 601
            M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF +SSSM +T+ERY K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK 72          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEF-ASSSMQETIERYLK 601
            M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF +SSSM  T+ERY K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQK 72          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERY 595
            M RGK +++RIEN  SRQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RG+L EF++SS M +T+ERY
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERY 70          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERY 595
            M RGK +++RIEN  SRQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RG+L EF++SS M +T+ERY
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERY 70          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERY 595
            M RGK +++RIENA SRQVTFSKRR GLLKKA ELSVLCDAEVAVI+FS  GKL EF+S+SM++T+ RY
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRY 69          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.395e-20
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEF-ASSSMQETIERYLK 601
            M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF +SSSM  T+ERY K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQK 72          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLK 601
            M RG+ +++R+EN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+I+FS RGKL EF S SSM +T+ERY K
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQK 72          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS-SSMQETIERYLKHTKDTRNKAQPTEQN 646
            M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S  SM  T+ERY K +    + A   ++N
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKEN 87          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLK 601
            M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF SSS M +T++RY K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQK 72          
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD17_ORYSJ8.178e-2169.57MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL9_PETHY8.178e-2172.22Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
SEP3_ARATH1.068e-2072.22Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MADS5_ORYSJ1.068e-2072.86MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI1.068e-2072.86MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL15_BRANA1.068e-2073.91Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
AGL9_SINAL1.395e-2072.22Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MTF1_PEA1.822e-2069.44MADS-box transcription factor 1 OS=Pisum sativum G... [more]
MADS8_ORYSJ1.822e-2060.92MADS-box transcription factor 8 OS=Oryza sativa su... [more]
SEP1_ARATH2.379e-2070.83Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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