FC923282

Overview
NameFC923282
Unique NameFC923282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.357e-17
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS--SSMQETIERY 595
            M RGK +++RIEN+T+RQVTFSKRR+G+LKKA E+SVLCDAEV V+IFS  GKL ++ S  +S+   +E+Y
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKY 71          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS--MQETIERYLKHTKDTR 619
            M +GK +M+RIE+AT RQVTFSKRR G LKKA EL+VLCDA+V V++FS +GKL +F S    + E   RY   T++TR
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTR 79          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS---------------------MQETIERYLKHTKD-TRNKAQPTEQNM 649
            M RGK +++RIENAT+RQVT+SKRR G++KKA EL+VLCDA+VA+I+FS  GK  EF S S                       E ++R L H KD  RN      Q M
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRM 109          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS--MQETIERYLK------------HTKDTRNKAQPTEQNMQ----HLKHE 667
            M RGK +++RIEN+++RQVT+SKRRNG++KKA E+SVLCDA V+VIIF+  GK+ EF S S  + + ++ Y K            H  +  N+ +    +MQ    HLK E
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGE 111          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 574
            M RGK Q++RIEN T+RQVT+SKRRNGL KKA EL+VLCDA+V++I+ S  GKL EF S S+
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSI 62          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS--SSMQETIERY------------LKHTKDTRNKAQPTEQNMQ 652
            M RGK Q++RIEN T+RQVT+SKRRNGL KKA EL+VLCDA V++I+FS   KL E+ S  ++ +E ++ Y             +  ++T+ K   T +N++
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLR 102          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS 565
            M RGK +++RIEN+T+RQVTFSKRR G+LKKA E+ VLCDAEV V+IFS  GKLS++ +
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCT 59          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS--SMQETIERYLKHTKDTRNKAQPTEQNM 649
            M RG+ ++++IEN T+RQVTFSKRR GLLKKA EL++LCDA++ VI+FS  GK+ E++S    +    +RYLK    TR +    +Q +
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLK-APSTRFEEMDVQQRI 88          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQN 646
            M R K  + +I N  +RQ TF+KR+NGL+KKA ELS+LCD E+A+I+FS   KL +++S  M + + RY  +T +TR      + N
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRYTDNTDNTRKNLTNQDYN 88          
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS--SSMQETIERYLK 601
            M RGK Q++RIEN T+RQVT+SKRRNGL KKA ELSVLCDA+V++I+ S   KL E+ S  ++ ++  ++Y K
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQK 73          
The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MADS2_ORYSJ9.357e-1760.56MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MAD30_ORYSJ2.722e-1656.96MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD16_ORYSJ6.065e-1645.87MADS-box transcription factor 16 OS=Oryza sativa s... [more]
GLOB_ANTMA6.065e-1644.14Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MADS1_PETHY7.921e-1666.13Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
AP3_ARATH1.035e-1544.12Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MADS4_ORYSJ3.010e-1566.10MADS-box transcription factor 4 OS=Oryza sativa su... [more]
MAD31_ORYSJ3.010e-1548.31MADS-box transcription factor 31 OS=Oryza sativa s... [more]
SRFC_DICDI3.931e-1544.19Serum factor response C OS=Dictyostelium discoideu... [more]
DEFA_ANTMA5.134e-1556.16Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]

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Properties
Property NameValue
Genbank descriptionC31703B03EF StrClemenN Citrus clementina cDNA clone C31703B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bp
GATATTTTTTTCCTTTTTTATGTAAATTTTATTTTTCTTTCGGGTCTGTG
TTTGTAGGTTTACCAAAACAAGCAAAACATGAGGCTTCAAATGTATTTGA
TACTAAAAATATAATACTCTTTTAATTTCTGTTTCTTTAAATAGGTGCTG
TTTGAGGATAGATCAATCCCCAGGGAATTAAGGAAAGGTGATTTTCGGTT
GGTGCTTTGCTCTCGCTCCCTCTGTGGTGACTAAATCAAAAATTAACAAT
CAGGAAAGGAACCTAGCTAGTTTAGTTACCTTTCTCTGCAATATCATCGT
TGCTCAAAAACCGCAGATATTTTGTCAGCTTCTTCCCATTTTGGTTTCTT
CTTTCTCTTTGGATTTTGCCCATTTGGTCTGAATTAAGATGGTGAGAGGC
AAAACTCAAATGAGGCGCATAGAGAATGCTACAAGCAGGCAAGTCACCTT
CTCCAAAAGAAGAAATGGTTTGCTAAAGAAGGCCTTTGAGCTTTCAGTTC
TCTGTGATGCTGAGGTTGCCGTTATTATCTTCTCTCCTAGAGGCAAGCTC
TCTGAATTTGCAAGTTCCAGCATGCAGGAGACAATAGAACGGTATCTGAA
GCATACAAAAGACACTCGAAACAAAGCACAGCCAACGGAACAAAACATGC
AGCATCTGAAGCATGAAGC
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