FC923282
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.357e-17 Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS--SSMQETIERY 595 M RGK +++RIEN+T+RQVTFSKRR+G+LKKA E+SVLCDAEV V+IFS GKL ++ S +S+ +E+Y Sbjct: 1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKY 71
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16 Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS--MQETIERYLKHTKDTR 619 M +GK +M+RIE+AT RQVTFSKRR G LKKA EL+VLCDA+V V++FS +GKL +F S + E RY T++TR Sbjct: 1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTR 79
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16 Identity = 50/109 (45.87%), Postives = 63/109 (57.80%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS---------------------MQETIERYLKHTKD-TRNKAQPTEQNM 649 M RGK +++RIENAT+RQVT+SKRR G++KKA EL+VLCDA+VA+I+FS GK EF S S E ++R L H KD RN Q M Sbjct: 1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRM 109
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.065e-16 Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS--MQETIERYLK------------HTKDTRNKAQPTEQNMQ----HLKHE 667 M RGK +++RIEN+++RQVT+SKRRNG++KKA E+SVLCDA V+VIIF+ GK+ EF S S + + ++ Y K H + N+ + +MQ HLK E Sbjct: 1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGE 111
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16 Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 574 M RGK Q++RIEN T+RQVT+SKRRNGL KKA EL+VLCDA+V++I+ S GKL EF S S+ Sbjct: 1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSI 62
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.035e-15 Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS--SSMQETIERY------------LKHTKDTRNKAQPTEQNMQ 652 M RGK Q++RIEN T+RQVT+SKRRNGL KKA EL+VLCDA V++I+FS KL E+ S ++ +E ++ Y + ++T+ K T +N++ Sbjct: 1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLR 102
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS 565 M RGK +++RIEN+T+RQVTFSKRR G+LKKA E+ VLCDAEV V+IFS GKLS++ + Sbjct: 1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCT 59
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS--SMQETIERYLKHTKDTRNKAQPTEQNM 649 M RG+ ++++IEN T+RQVTFSKRR GLLKKA EL++LCDA++ VI+FS GK+ E++S + +RYLK TR + +Q + Sbjct: 1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLK-APSTRFEEMDVQQRI 88
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15 Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKAQPTEQN 646 M R K + +I N +RQ TF+KR+NGL+KKA ELS+LCD E+A+I+FS KL +++S M + + RY +T +TR + N Sbjct: 3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRYTDNTDNTRKNLTNQDYN 88
BLAST of FC923282 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15 Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 2 Query: 389 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS--SSMQETIERYLK 601 M RGK Q++RIEN T+RQVT+SKRRNGL KKA ELSVLCDA+V++I+ S KL E+ S ++ ++ ++Y K Sbjct: 1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQK 73 The following BLAST results are available for this feature:
BLAST of FC923282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 118
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923282 ID=FC923282; Name=FC923282; organism=Citrus clementina; type=EST; length=669bpback to top |