FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHIE6 (Glucose-1-phosphate adenylyltransferase OS=Rhizobium etli (strain CIAT 652) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 67/220 (30.45%), Postives = 102/220 (46.36%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVR----SRLESGV 593
            AD+T+ C+ +    A+ +G+M ++   +I+ F EKP  P               +PD   F  +ASMG+Y+F T  LL+ LR        S DFG +IIP  V++    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R     +++S  C +   S+  S++  GVR    S+LE  V
Sbjct:  154 ADVTIGCLEVPRMEATGFGVMHVNDKDEILAFVEKPADPP-------------GIPDKPDFA-LASMGIYVFHTKFLLDALRRDAADPNSSRDFGKDIIPYIVQNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSATSSVVSGDCIISGASLNKSLLFTGVRANSFSKLEGAV 359          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_LACCB (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus casei (strain BL23) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 63/217 (29.03%), Postives = 104/217 (47.93%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLS---NDFGSEIIPASVKDHNVQ-AFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTP---------FYTSARFLPPTKVDR-CKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            KA +TV+ +P++   A  +G+M  D + +II+F EKP  P                        +ASMG+Y+F    L   L  SY       DFG ++IPA +  +    A+ F  YW+D+GTI+S ++AN+         EF +P  P          ++    LPP  + +  K+  ++I  GC++   S+QHSI+    ++  G   +D+M+M
Sbjct:  145 KASLTVAVMPVEKEEAKRFGIMNTDDTDRIIEFEEKPAKPKSN---------------------LASMGIYIFNWPTLKQYLTESYATDGAMEDFGHDVIPAYLTHNEASYAYAFRGYWKDVGTIQSLWEANM---------EFLNPNNPLNIGNRNWRIFSQNEALPPMFLTKTAKVAGSMIVDGCYVAG-SIQHSILSQNVKIGEGSVIKDSMIM 330          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_LACC3 (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 63/217 (29.03%), Postives = 104/217 (47.93%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLS---NDFGSEIIPASVKDHNVQ-AFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTP---------FYTSARFLPPTKVDR-CKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            KA +TV+ +P++   A  +G+M  D + +II+F EKP  P                        +ASMG+Y+F    L   L  SY       DFG ++IPA +  +    A+ F  YW+D+GTI+S ++AN+         EF +P  P          ++    LPP  + +  K+  ++I  GC++   S+QHSI+    ++  G   +D+M+M
Sbjct:  145 KASLTVAVMPVEKEEAKRFGIMNTDDTDRIIEFEEKPAKPKSN---------------------LASMGIYIFNWPTLKQYLTESYATDGAMEDFGHDVIPAYLTHNEASYAYAFRGYWKDVGTIQSLWEANM---------EFLNPNNPLNIGNRNWRIFSQNEALPPMFLTKTAKVAGSMIVDGCYVAG-SIQHSILSQNVKIGEGSVIKDSMIM 330          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_THENN (Glucose-1-phosphate adenylyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 63/231 (27.27%), Postives = 113/231 (48.92%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDH--NVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIG 686
            AD T++C+ +    AS +G+M  D  G+I+ F EKP  P                        +AS+G+Y+F  + L  +L    +    S+DFG ++IP  ++++  ++ AF F+ YW D+GTI+S+++ANL L      F  YDP   F+T +  +PP  V    +   ++IS G  +    V +S++    R+  G   +++++M          + +++    V IG
Sbjct:  145 ADGTIACMEVPLEEASRFGIMITDVEGRIVDFEEKPPKPRSN---------------------LASLGIYVFNYEFLKRVLIEDENDPNSSHDFGKDVIPKILRENKGSLYAFRFDGYWRDVGTIRSYWEANLELVLPVPPFNLYDPNWRFFTHSEEMPPAYVAPEARTSTSLISEGAEVYG-EVTNSVIFQGVRIGKGTVVKNSVIMTRTEIGENCYLENVIVAENVKIG 353          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHITR (Glucose-1-phosphate adenylyltransferase OS=Rhizobium tropici GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 65/247 (26.32%), Postives = 111/247 (44.94%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            AD+T+ C+ +    A  +G+M +D   +II F EKP  P               +P    F  +ASMG+Y+F T  L+  L+        S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R   V ++++  C +   S+ +S++    R  S  + +  +++ +      +++ +++ +  V I  G
Sbjct:  154 ADVTIGCLEVPRMEAVGFGVMHVDDKDRIIDFVEKPADPP-------------GIPGNPDFA-LASMGIYVFHTKFLIECLKRDAADPNSSRDFGKDIIPHIVKNGKAVAHRFTQSCVRSDFEREAYWRDVGTIDAYWQANIDLTAVVPELDIYDKSWPIWTYAEISPPAKFVHDDEDRRGSAVSSVVAGDCIISGASLYNSLLFTGVRANSYSKLEGAVVLPSVKVGRRAQLKNVVIDHGVTIPEG 386          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHIL3 (Glucose-1-phosphate adenylyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 66/217 (30.41%), Postives = 100/217 (46.08%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVRSRLESGVE 596
            AD+T+ C+ +    A  +G+M ++   +II F EKP  P               +PD   F  +ASMG+Y+F T  LL+ LR        S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R     +++S  C +    + +S++  GVR+   S +E
Sbjct:  154 ADVTIGCLEVPRMEAVGFGVMHVNDKDEIIAFVEKPADPP-------------PIPDKPDFA-LASMGIYVFHTKFLLDALRRDAADPNSSRDFGKDIIPYIVKNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSATSSVVSGDCIISGAMLNNSLLFTGVRANSFSKME 356          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_AGRRK (Glucose-1-phosphate adenylyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.751e-19
Identity = 65/217 (29.95%), Postives = 100/217 (46.08%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVRSRLESGVE 596
            A++T+ C+ +    A  +G+M +D   QII F EKP  P               +P    F  +ASMG+Y+F T  L+  L+        S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R   V ++++  C +   S+ +S++  GVR+   S +E
Sbjct:  154 AEVTIGCLEVPRMEAVGFGVMHVDEKDQIIDFVEKPADPP-------------GIPGNPDFA-LASMGIYVFHTKFLIECLKRDAADPNSSRDFGKDIIPYIVKNGKAVAHRFAQSCVRSDFEREAYWRDVGTIDAYWQANIDLTAVVPELDIYDKSWPIWTYAEISPPAKFVHDDENRRGSAVSSVVAGDCIISGASLSNSLLFTGVRANSYSKLE 356          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_NITMU (Glucose-1-phosphate adenylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=glgC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 58/221 (26.24%), Postives = 108/221 (48.87%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A++T++C+ +    AS +G+M + + G++  F EKP  P              ++P    +  + SMG+Y+F  D L + L   +     S+DFG ++IP  V    V    F+D          YW D+GT++++++ANL L +       YD   P +T    LPP K        R + +D+++S GC +   +V+ S++    ++ S    +D++++
Sbjct:  157 AEMTIACIDLPLEEASAFGVMSVTKDGRVTDFTEKPSVPT-------------AVPGRPGYALV-SMGIYVFNADFLFDQLIRDHDDPNSSHDFGKDLIPHLVPRSRVFTHRFSDSCVNMVSGVPYWRDVGTVEAYWEANLDLVQVTPDLNLYDQDWPIWTHQEQLPPAKFVFDNDDRRGQALDSMVSGGCIISGATVRRSLLFSNVQVRSYSVLEDSVIL 363          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_ANADE (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.899e-19
Identity = 66/225 (29.33%), Postives = 108/225 (48.00%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLN--LLRSSYPLS-NDFGSEIIPASVKDHNVQAFLF------------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-------DRC-KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMM 614
            KAD+TV+ VP+    AS++G++++D  G+++ F EKP   D K M  D T              +ASMG YLF T+ L+   +  +  P S +DFG  I+ +  +   V  + F              YW D+G+I ++F AN+ L      F  Y+   P +T     PP K        +R  +  D++IS GC +    V HSI+  + R+ S    +++++
Sbjct:  142 KADLTVAAVPIPVGEASEFGIIEVDAEGRMVGFVEKPTS-DPKTMPGDPTRC------------LASMGNYLFTTEALVQEIVRDAGDPASAHDFGKSIVASMYQRKRVYVYDFARNVVPGQTERERGYWRDVGSIDAYFQANMDLVAVDPVFSLYNDEWPIFTVQYNYPPAKFVFNNERDNRIGRATDSLISEGCIISGAHVHHSILSPKVRVNSYATVEESIV 353          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SALTI (Glucose-1-phosphate adenylyltransferase OS=Salmonella typhi GN=glgC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 67/223 (30.04%), Postives = 105/223 (47.09%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP-DAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A  TV+C+P+    A+ +G+M +D + +II F EKP  P              +MP DA K   +ASMG+Y+F  D L  LL +       S+DFG +IIP   ++    A  F             YW D+GT+++++ ANL L     + + YD   P  T    LPP K   DR       +++++S GC +    V  S++  R R+ S       +++
Sbjct:  161 ARCTVACMPVPIKEATAFGVMAVDENDKIIDFVEKPANPP-------------AMPGDASKS--LASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRINSFCNIDSAVLL 368          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_RHIE62.872e-1930.45Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_LACCB2.872e-1929.03Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_LACC32.872e-1929.03Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_THENN3.751e-1927.27Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_RHITR3.751e-1926.32Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHIL33.751e-1930.41Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_AGRRK3.751e-1929.95Glucose-1-phosphate adenylyltransferase OS=Agrobac... [more]
GLGC_NITMU4.899e-1926.24Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_ANADE4.899e-1929.33Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]
GLGC_SALTI6.398e-1930.04Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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