FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC1_ALHEH (Glucose-1-phosphate adenylyltransferase 1 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 66/218 (30.28%), Postives = 112/218 (51.38%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCK------IVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A +TV CV +   RAS +G+M ++   Q++ F EKPK P        T + G   PD      + SMG+Y+F  D L  LLR    ++  S DFG ++IP ++ +H VQA+ F+D       YW D+GT+ +FF AN+ L  +  +   YD   P +T    LPP K  + +       +++++S G  +    V+ S++  +  ++ G    + +++
Sbjct:  158 AAMTVGCVEVPRKRASAFGVMSVNEERQVLAFNEKPKDP--------TPMPG--NPDRA----LVSMGIYVFDRDYLFQLLREDAENFDSSRDFGKDVIPNAIANHKVQAYPFSDPVSGQQAYWRDVGTVDAFFQANMELIGEDPELNLYDEEWPIWTYQAQLPPAKFIQGRDGRHGTAINSMVSGGDIIHGAEVRDSLLFSQVVVQPGATVHEAVIL 361          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_THICR (Glucose-1-phosphate adenylyltransferase OS=Thiomicrospira crunogena (strain XCL-2) GN=glgC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 63/217 (29.03%), Postives = 107/217 (49.31%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+T+ C+ +    A+ +G+M +D   +I +F EKP  PD    + D  L              ASMG+Y+F T+ L   L     +   S DFG +IIP+ ++D  V+AF F D      YW D+GTI+S++ A+L L         YD   P +T    +PP K        R + +D++++ GC +    ++ S++     + S    +D++++
Sbjct:  157 ADVTIGCIEVPRMEATGFGVMSVDECFKITKFTEKPANPDAMPHKPDKAL--------------ASMGIYVFSTEFLFQKLIEDADNPNSSRDFGKDIIPSIIEDWQVRAFPFEDETGLPVYWRDVGTIESYWKASLDLCSITPDLNLYDEDWPIWTYQAQMPPAKFIFDDEGRRGEAIDSLVAGGCIISGARIKRSVISSGGHVHSFCLVKDSVLL 359          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_TERTT (Glucose-1-phosphate adenylyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=glgC PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 72/224 (32.14%), Postives = 115/224 (51.34%), Query Frame = 3
Query:   12 ADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGP----DLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC  VP++++ A  +G+M +D + +I++F EKPK P    D+ GM                   +ASMG Y+F T+ L   LR+        +DFG  IIPA +K+ NV+A+ F D       YW D+GT+ SF+ AN+ L E   +   Y+   P +T    LPP K        R   VD+++S GC +    V  S++     + S  + ++++++
Sbjct:  156 ADLTVSCIEVPIEEA-AGAFGVMTVDDNNRILRFDEKPKHPTELNDMPGMT------------------LASMGNYIFNTEFLFEQLRADAENPESEHDFGKNIIPAIIKNSNVRAYRFRDHETDRASYWRDVGTLDSFWLANMELVEPSPQLNLYNQDWPIWTYQTHLPPAKFVFDDDDRRGYAVDSMVSGGCIVSGGKVSKSLLFSDVHVHSYTDLEESVVL 360          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_VIBFM (Glucose-1-phosphate adenylyltransferase OS=Vibrio fischeri (strain MJ11) GN=glgC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 65/224 (29.02%), Postives = 116/224 (51.79%), Query Frame = 3
Query:    3 RPKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL---SNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVD-----RCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMG 620
            + KA +TVS + M    AS +G++++D  G++I F EKP  P     +C     G+++          SMG Y+F  + L   L     L   S+DFG +IIP    + NV  + F+           YW D+GTI+S+++A++ L ++ A F  Y+ + P +T    LPP         R +I+D+++  G ++R   ++ S++G RS + S  +  +++++G
Sbjct:  140 KKKAALTVSALRMPAKDASGFGVIEVDEHGKMIGFEEKPSNP-----KCIPGQPGIAL---------VSMGNYIFEAESLCKELIHDAALEDSSHDFGKDIIPKMFPEGNVYVYDFSTNHITGEKKEVYWRDVGTIESYWEAHMDLLKKDAPFSLYNRKWPLHTYYPPLPPATFSDSDNGRVQIIDSLVCGGSYIRGSRIEKSVLGFRSNIASACDISESILLG 349          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_VIBF1 (Glucose-1-phosphate adenylyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=glgC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 65/224 (29.02%), Postives = 116/224 (51.79%), Query Frame = 3
Query:    3 RPKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL---SNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVD-----RCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMG 620
            + KA +TVS + M    AS +G++++D  G++I F EKP  P     +C     G+++          SMG Y+F  + L   L     L   S+DFG +IIP    + NV  + F+           YW D+GTI+S+++A++ L ++ A F  Y+ + P +T    LPP         R +I+D+++  G ++R   ++ S++G RS + S  +  +++++G
Sbjct:  140 KKKAALTVSALRMPAKDASGFGVIEVDEHGKMIGFEEKPSNP-----KCIPGQPGIAL---------VSMGNYIFEAESLCKELIHDAALEDSSHDFGKDIIPKMFPEGNVYVYDFSTNHIKGEKKEVYWRDVGTIESYWEAHMDLLKKDAPFSLYNRKWPLHTYYPPLPPATFSDSDNGRVQIIDSLVCGGSYIRGSRIEKSVLGFRSNIASACDISESILLG 349          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBCH (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio cholerae GN=glgC1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 69/248 (27.82%), Postives = 125/248 (50.40%), Query Frame = 3
Query:    3 RPKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPP-----TKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            R +A++TVS + M  S+AS +G++++D +G+++ F EKP  P              S+P   ++  + SMG Y+F  + L   LR    +   S+DFG +IIP       V  + F          + YW D+GTI+S++ A++ L ++  +F  Y+   P +T    LPP      K  + KI D++IS G +++  ++  S++G RS + +G    +++++G         I   + ++ V I  G
Sbjct:  140 RMEAELTVSALRMPISQASQFGVIEVDENGKMVGFEEKPSNPK-------------SIPGEPEWA-LVSMGNYIFEAETLSKELREDAENNQSSHDFGKDIIPKMFPRGKVYVYDFTTNKIKGEKESTYWRDVGTIESYWSAHMDLLDKDPEFSLYNRSWPLHTYYPPLPPATFVDVKDKKVKITDSLISGGSYIQGSTIYKSVLGFRSNIAAGSFISESVILGDVKIGAGCTIKRAIIDKDVEIAAG 373          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_METFK (Glucose-1-phosphate adenylyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glgC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 67/224 (29.91%), Postives = 112/224 (50.00%), Query Frame = 3
Query:    3 RPKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            R KAD+TV+C+ +    AS +G+M +D + +++ F EKP  P              S+PD      +ASMG+Y+F    L   L         S+DFG +IIP  +K + V A  F D          YW D+GT+ ++++AN+ LT+   +   YD + P +T    LPP K        R +  D++IS GC +   +V++S++    R+ S    + ++++
Sbjct:  156 RNKADMTVACINVPLKEASAFGVMGVDENDRVVDFEEKPAHPS-------------SLPDDPDHA-LASMGIYVFNAAFLYEQLIRDADDPKSSHDFGHDIIPYLIKKYRVFAHRFTDSCVGAADGNYYWRDVGTVDAYWEANMELTKVVPELNLYDRQWPIWTYQEQLPPAKFVFDNEERRGQATDSLISGGCIVSGANVRNSVLFSDVRVNSYSSIEQSVIL 365          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_MAGSA (Glucose-1-phosphate adenylyltransferase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 67/222 (30.18%), Postives = 105/222 (47.30%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY---PLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TV+C+ +    A  +G+M +D   ++I+F EKP  P       D  L              ASMG+Y+F   +L +LL+        S+DFG +IIP+ VK H V A  F D           YW D+GTI ++++AN+ LT        YD   P +T     PP K        R   VD++++ GC +    V+ S++    R+ S    +D +++
Sbjct:  163 ADVTVACIEVPLETAKGFGVMAVDEDDRVIRFDEKPDHPQPMPGHPDQAL--------------ASMGIYIFNAQLLFDLLQKDSINPETSHDFGKDIIPSLVKSHRVIAHHFQDSCVMHEGAREHYWRDVGTIDAYWEANIDLTTVTPALNLYDESWPIWTDQPQSPPAKFVFDSEHRRGMAVDSLVAGGCIVSGAVVRRSMLFSNVRVNSFCVVEDAVIL 370          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHOPT (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 71/247 (28.74%), Postives = 119/247 (48.18%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLL--AERKVPIG 686
            AD+TV C+ +  + A+ +G+M  D + +II F EKP  P     + D +L+              SMG+Y+F T  LL+ LR        S+DFG +IIP  VK     A  F+            YW D+GT+ +++ AN+ LT+   + + YD   P +T     PP K        R + V +++S GC +   S++HS++    R+ S    ++T+++          + +++  AE K+P G
Sbjct:  154 ADVTVGCLEVPRAEATAFGVMHTDTTDRIISFLEKPADPPAMPGKADKSLV--------------SMGIYVFETKFLLDELRRDAADPNSSHDFGKDIIPYIVKHGKAVAHHFDKSCRRSSSEAVSYWRDVGTVDAYWAANIDLTDIVPELDLYDREWPIWTYGEITPPAKFVHDKEGRRGEAVSSLVSGGCIISGASLRHSLLFTGVRVHSFSHVENTVVLPYADIGRSCRLKNVVIDAEVKLPAG 386          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHOPA (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris GN=glgC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 71/247 (28.74%), Postives = 119/247 (48.18%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLL--AERKVPIG 686
            AD+TV C+ +  + A+ +G+M  D + +II F EKP  P     + D +L+              SMG+Y+F T  LL+ LR        S+DFG +IIP  VK     A  F+            YW D+GT+ +++ AN+ LT+   + + YD   P +T     PP K        R + V +++S GC +   S++HS++    R+ S    ++T+++          + +++  AE K+P G
Sbjct:  154 ADVTVGCLEVPRAEATAFGVMHTDTTDRIISFLEKPADPPAMPGKADKSLV--------------SMGIYVFETKFLLDELRRDAADPNSSHDFGKDIIPYIVKHGKAVAHHFDKSCRRSSSEAVSYWRDVGTVDAYWAANIDLTDIVPELDLYDREWPIWTYGEITPPAKFVHDKEGRRGEAVSSLVSGGCIISGASLRHSLLFTGVRVHSFSHVENTVVLPYADIGRSCRLKNVVIDAEVKLPAG 386          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC1_ALHEH2.510e-2330.28Glucose-1-phosphate adenylyltransferase 1 OS=Alkal... [more]
GLGC_THICR7.304e-2329.03Glucose-1-phosphate adenylyltransferase OS=Thiomic... [more]
GLGC_TERTT7.304e-2332.14Glucose-1-phosphate adenylyltransferase OS=Teredin... [more]
GLGC_VIBFM1.627e-2229.02Glucose-1-phosphate adenylyltransferase OS=Vibrio ... [more]
GLGC_VIBF11.627e-2229.02Glucose-1-phosphate adenylyltransferase OS=Vibrio ... [more]
GLGC1_VIBCH2.125e-2227.82Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_METFK3.625e-2229.91Glucose-1-phosphate adenylyltransferase OS=Methylo... [more]
GLGC_MAGSA3.625e-2230.18Glucose-1-phosphate adenylyltransferase OS=Magneto... [more]
GLGC_RHOPT4.734e-2228.74Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_RHOPA4.734e-2228.74Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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