FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:240..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_DECAR (Glucose-1-phosphate adenylyltransferase OS=Dechloromonas aromatica (strain RCB) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 65/221 (29.41%), Postives = 105/221 (47.51%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL---SNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TV+C+ +    A ++G+M +D   ++I F EKP+ P     Q D  L              ASMG+Y+F T  L   L         + DFG +IIP  V  + V A  F D          YW D+GTI ++++AN+ +T+   +   YD   P +T    +PP K        R   VD++I+ GC +   SV+ S++     + S    +D++++
Sbjct:  172 ADMTVACIDVPLDEAREFGVMGVDEQDRVIDFVEKPQNPPAIPGQPDRAL--------------ASMGIYIFNTKFLFEQLERDAMTKGSNRDFGKDIIPYIVPRYRVFAHRFADSCVGSDNHRPYWRDVGTIDAYWEANMEMTKVTPELNVYDRDWPIWTYQEQIPPAKFVFDDEDRRGTAVDSLIAGGCIISGASVKRSLLFSSVNVHSWASVEDSVVL 378          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVY (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus (strain YJ016) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 66/246 (26.83%), Postives = 121/246 (49.19%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            +A +TVS + M  + AS +G++++D  G+++ F EKP  P              S+P    F  + SMG Y+F  DVL   L     +   S+DFG +IIP      +V  + F+           YW D+GTI +++ A++ L +  A F  Y+ + P +T    LPP         R +I+D+++ +G ++R   ++ S++G RS + S  +  +++++G         +  ++ ++ V I  G
Sbjct:  142 QAALTVSALRMPLAEASQFGVIEVDAEGRMVGFEEKPSAPK-------------SIPGDPDFALV-SMGNYIFEADVLFAELIEDADNENSSHDFGKDIIPKMFPRGDVFVYDFSQNRISGEKAEVYWRDVGTIDAYWQAHMDLLKTDAPFSLYNRKWPLHTYQPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISESILLGDVKVGEGCVLRRVIVDKDVDIAPG 373          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHESR (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-7) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 69/219 (31.51%), Postives = 109/219 (49.77%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC+ +  + A+  +G+M++D   +I+ F EKPK P       +  L              ASMG Y+F T+ L + L+     +N   DFG +IIP+ ++ H V A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   VD+IIS GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPVAEAAGAFGVMEVDDEMRILGFEEKPKHPKHSPGNPEKCL--------------ASMGNYVFNTEFLFDQLKKDAQNANSDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSVVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHESM (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-4) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 69/219 (31.51%), Postives = 109/219 (49.77%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC+ +  + A+  +G+M++D   +I+ F EKPK P       +  L              ASMG Y+F T+ L + L+     +N   DFG +IIP+ ++ H V A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   VD+IIS GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPVAEAAGAFGVMEVDDEMRILGFEEKPKHPKHSPGNPEKCL--------------ASMGNYVFNTEFLFDQLKKDAQNANSDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSVVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVU (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 66/245 (26.94%), Postives = 120/245 (48.98%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            A +TVS + M  + AS +G++++D  G+++ F EKP  P              S+P    F  + SMG Y+F  DVL   L     +   S+DFG +IIP      +V  + F+           YW D+GTI +++ A++ L +  A F  Y+ + P +T    LPP         R +I+D+++ +G ++R   ++ S++G RS + S  +  +++++G         +  ++ ++ V I  G
Sbjct:  143 AALTVSALRMPLAEASQFGVIEVDAEGRMVGFEEKPSAPK-------------SIPGDPDFALV-SMGNYIFEADVLFAELIEDADNENSSHDFGKDIIPKMFPRGDVFVYDFSQNRISGEKAEVYWRDVGTIDAYWQAHMDLLKTDAPFSLYNRKWPLHTYQPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISESILLGDVKVGEGCVLRRVIVDKDVDIAPG 373          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHESA (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain ANA-3) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 69/219 (31.51%), Postives = 108/219 (49.32%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC+ +  + A+  +G+M++D   +I+ F EKPK P       +  L              ASMG Y+F T+ L   L+     +N   DFG +IIP+ ++ H V A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   VD+IIS GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPVAEAAGAFGVMEVDDEMRILGFEEKPKHPKHSPGNPEKCL--------------ASMGNYVFNTEFLFEQLKKDAQNANSDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSVVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB8 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS185) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 69/220 (31.36%), Postives = 110/220 (50.00%), Query Frame = 3
Query:   12 ADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC  VP+ ++ A  +G+M++D   +I+ F EKP+ P       +  L              ASMG Y+F T+ L + L+    +     DFG +IIPA ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   +D+I+S GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPIAEA-AGSFGVMEVDEEMRILGFEEKPQQPKHSPGNPEMCL--------------ASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSGGCIISGATVRRSVLFNEVRVCSYSLVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB2 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS223) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 69/220 (31.36%), Postives = 110/220 (50.00%), Query Frame = 3
Query:   12 ADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC  VP+ ++ A  +G+M++D   +I+ F EKP+ P       +  L              ASMG Y+F T+ L + L+    +     DFG +IIPA ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   +D+I+S GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPIAEA-AGSFGVMEVDEEMRILGFEEKPQQPKHSPGNPEMCL--------------ASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSGGCIISGATVRRSVLFNEVRVCSYSLVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_ACIBL (Glucose-1-phosphate adenylyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 69/243 (28.40%), Postives = 112/243 (46.09%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCK------IVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            AD+T++ + +D S    +G++ +D    +  F EKPK  +L+           S  D  K    ASMG+Y+F TDVL+ +L       N   DFG  I+P  V ++ + +F F D       YW D+GT+ +++DANL L      F  YD   P  T  R  PP K    +       +D+++S GC +   +V++ ++    R+ S  E   +++           I   + +R V I  G
Sbjct:  145 ADVTLATILIDPSETRHFGVVDVDNQSHVNGFVEKPKSTELR-----------SPYDPSKVS--ASMGIYIFNTDVLIPVLLKDAEDPNSKHDFGHNILPKMVGEYKIYSFNFIDENKKEALYWRDVGTLDAYYDANLDLVSVAPVFNLYDKAWPIRTHQRQYPPAKFVFAEQGRMGTALDSVVSMGCIVSGGTVRNCVLSPDVRVNSFSEVDSSILFSHVNVGRHCRIRRSIIDRDVHIPEG 374          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_BRAJA (Glucose-1-phosphate adenylyltransferase OS=Bradyrhizobium japonicum GN=glgC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 69/247 (27.94%), Postives = 120/247 (48.58%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR--SSYPLSN-DFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            AD+TV C+ M  + +S +G+M ID +G I +F EKP  P     + D +L              ASMG+Y+F    L + L+  +  P SN DFG +IIP  VK+    A  F+            YW D+GT+ +++ AN+ LT+   + + +D   P ++ +   PP K        R + V +++S GC +   S++ S++    R+ S    ++ ++M        + + +++ +R V I  G
Sbjct:  154 ADVTVGCLEMPRAESSGFGIMHIDENGWIQEFLEKPADPPPMPGKPDVSL--------------ASMGIYVFDAKFLFDQLKRDAEDPSSNHDFGKDIIPYIVKNGRAIAHQFSTSCVRSGDDPRAYWRDVGTVDAYWAANIDLTDVVPELDLFDRAWPIWSYSEITPPAKFVHDEESRRGQAVSSLVSGGCIISGASLRRSLLFTGVRINSYANVENAVIMPYVNVGRGARLKNVVIDRGVEIPEG 386          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_DECAR3.069e-2129.41Glucose-1-phosphate adenylyltransferase OS=Dechlor... [more]
GLGC1_VIBVY3.069e-2126.83Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_SHESR4.008e-2131.51Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESM4.008e-2131.51Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC1_VIBVU4.008e-2126.94Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_SHESA5.234e-2131.51Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB85.234e-2131.36Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB25.234e-2131.36Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_ACIBL5.234e-2128.40Glucose-1-phosphate adenylyltransferase OS=Acidoba... [more]
GLGC_BRAJA6.836e-2127.94Glucose-1-phosphate adenylyltransferase OS=Bradyrh... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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