FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:240..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_THEAB (Glucose-1-phosphate adenylyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 65/226 (28.76%), Postives = 113/226 (50.00%), Query Frame = 3
Query:   21 TVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIG 686
            TV+C+ +  S AS +G+M  D   +II+F EKPK P                        +AS+G+Y+F+   +  +L     +   S+DFG +IIP  ++   V AF F+ YW+D+GTI S++++NL LT     F  +D     YT ++ +PP  + D  K+ +++IS GC +   +V +S++     +  G   +++++M          I + +    V IG
Sbjct:  148 TVACMEVPLSEASRFGIMVTDLENRIIEFQEKPKQPKST---------------------LASLGIYVFQWSFIREVLIEDAKNDQSSHDFGKDIIPKIIQTERVFAFPFDGYWKDVGTIYSYWESNLELTRPIPPFNIHDENWRIYTHSKEMPPAYIADSTKVKNSLISEGCEIYG-AVSNSVLAQGVEIGKGSIVKNSVIMSNVRIGENCYIENAIIAENVVIG 351          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_THEYD (Glucose-1-phosphate adenylyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 67/243 (27.57%), Postives = 121/243 (49.79%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLN-LLRSSYPLSNDFGSEIIPASV-KDHNVQAFLF-------------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQ 695
            A +TV+  P+    AS +G++  D   +I  F EKPK P             + MPD     Y+ SMG Y+F  D+L++ L+R+     +DFG+ +IP  V +   V A+ F               YW D+GTI ++FDA++ +  +   FE Y+   P + +    PP K+   +I ++II+ G  +    +++S +   S +E  VE +D+++M     +  S++  ++ ++K  +  G+
Sbjct:  144 AHVTVAARPVALKHASSFGVIITDPDHRIAGFQEKPKDP-------------IPMPDNPDMAYV-SMGNYIFNADILIDALVRAEKKKQHDFGAHVIPDLVGRKCKVYAYDFAKNEIPGIKSYEERGYWRDVGTISAYFDAHMDMLGEKPIFEIYNKMWPIHPARYEGPPVKILDGEIKNSIIAEGALIYGGKIENSFIRSGSIIEKDVEIKDSLIMDDVIIKRNSKLYRVIVDKKNVVYEGE 372          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB9 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS195) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 69/220 (31.36%), Postives = 109/220 (49.55%), Query Frame = 3
Query:   12 ADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC  VP+ ++ A  +G+M++D   +I+ F EKP  P       +  L              ASMG Y+F T+ L + L+    +     DFG +IIPA ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   +D+I+S GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPIAEA-AGSFGVMEVDEEMRILGFEEKPLQPKHSPGNPEMCL--------------ASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSGGCIISGATVRRSVLFNEVRVCSYSLVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHESW (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain W3-18-1) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 66/219 (30.14%), Postives = 111/219 (50.68%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC+ +  + A+  +G++++D + +I+ F EKP+ P                PD  +   +ASMG Y+F T+ L   L+    +     DFG +IIP+ ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   +D+I+S GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPIAEAAGAFGVIEVDDNMRILGFEEKPQRPK-------------PSPDNPEM-CLASMGNYVFNTEFLFEQLKKDSQNATSDRDFGKDIIPSIIEKHNVFAYPFKSPFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSSGCIISGATVRRSVLFNEVRVCSYSVVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHEPC (Glucose-1-phosphate adenylyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 66/219 (30.14%), Postives = 111/219 (50.68%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC+ +  + A+  +G++++D + +I+ F EKP+ P                PD  +   +ASMG Y+F T+ L   L+    +     DFG +IIP+ ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   +D+I+S GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPIAEAAGAFGVIEVDDNMRILGFEEKPQRPK-------------PSPDNPEM-CLASMGNYVFNTEFLFEQLKKDSQNATSDRDFGKDIIPSIIEKHNVFAYPFKSPFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSSGCIISGATVRRSVLFNEVRVCSYSVVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_THEM4 (Glucose-1-phosphate adenylyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 64/226 (28.32%), Postives = 109/226 (48.23%), Query Frame = 3
Query:   21 TVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV-DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIG 686
            TV+C+ +  S A+ +G+M  D   +II+F EKPK P                        +AS+G+Y+F+ + +  +L       N   DFG +IIP  +    V AF F  YW+D+GTI S++++NL LT     F  +D     YT +  +PP  + D  ++ +++IS GC +    V +S++     +  GV  +++++M          I + +    V IG
Sbjct:  148 TVACMEVPLSEANRFGIMVTDLENRIIEFQEKPKFPKST---------------------LASLGIYVFQWNFIREVLMEDAKDENSTHDFGKDIIPKIINTKRVYAFPFEGYWKDVGTIYSYWESNLELTRPIPPFNIHDENWKIYTHSEEMPPAYISDDARVKNSLISEGCEIYG-EVYNSVLAQGVEVGEGVIIKNSVVMSRVRIGNNCFIENAIIAENVVIG 351          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_DEIRA (Glucose-1-phosphate adenylyltransferase OS=Deinococcus radiodurans GN=glgC PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 67/249 (26.91%), Postives = 117/249 (46.99%), Query Frame = 3
Query:    9 KADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKD-HNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            +AD+T++  PM  S+A  +G+M++D   ++ +F EK   P     Q D +L               SMG Y+F    L  LL +S        DFG  +IP ++ D ++VQA+ F           N YW D+GT+ ++F+AN+ L     +F+ Y+P  P  TS+ F PP K        + +  ++I++ G  +   +V+ S++G   R  S    +  ++         S +  ++ ++ V I  G
Sbjct:  148 RADVTIAAYPMPQSQAHQFGVMQVDERWRVTEFHEKVPDPPTIPGQADLSL--------------TSMGNYIFSRRALEELLEASISGQETGYDFGHNVIPRALSDGYHVQAYDFHKNPIPGQERPNTYWRDVGTLDAYFEANMDLVSVNPEFDIYNPEWPLRTSSEFSPPAKFVHESEGRKGQAFNSIMAGGAIISGGTVRDSVLGRNVRTHSYSLVESCVLFDDVQVGRHSHLRRVIVDKDVVIPPG 382          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_CLOTH (Glucose-1-phosphate adenylyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 65/234 (27.78%), Postives = 115/234 (49.15%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKD-HNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYT-----SARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIG 686
            AD T+S + +    AS YG+M    +G+I +F EKP+ P                        +ASMGVY+F  +VL   L     +   ++DFG  IIP  +K+  ++ A+ FN YW D+GTI++++++N+ L  +  +F  +DP    YT      A ++ PT      +  +I++ GC +   SV++S++     +  G E  D+++M        ++I   +   +V +G
Sbjct:  147 ADATISVINVPWEEASRYGIMNTYENGKIYEFEEKPQNPKSN---------------------LASMGVYIFNWEVLKEYLIRDDQNEESAHDFGKNIIPMMLKEGRSMWAYKFNGYWRDVGTIQAYWESNMDLISRVPEFNLFDPAWKIYTPNPVKPAHYIGPTG----SVKKSIVAEGCMIYG-SVRNSVLFPGVYVSEGAEIVDSIVMSDSVIGENTQIYKCIIGEEVKVG 354          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHOP5 (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 67/247 (27.13%), Postives = 113/247 (45.75%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKVDRCKI------VDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            A +TV C+ +    AS +G+M +D + QI+ F EKP  P              +MPD      +ASMG+Y+F T  L   LR   +    S+DFG +IIP  VK     A  F+            YW D+GT+ +++ AN+ LT+   + + YD   P +T     PP K    K+        +++S GC +   ++  +++    R+ S    +  +++         E+ +++ +R V I  G
Sbjct:  154 AHVTVGCLEVPRKEASGFGVMHVDANDQILSFIEKPAHPP-------------AMPDKPDMA-LASMGIYVFETKFLFEELRRDAADKNSSHDFGKDIIPHIVKHGKAVAHRFDRSCIRSHAESASYWRDVGTVDAYWAANIDLTDIVPQLDLYDHNWPIWTYGEITPPAKFVHDKVGRRGLATSSLVSGGCIISGSTLTQTLLFTGVRIHSFSTIEQAVILPYVEVGRACELKNVVIDRGVRIPDG 386          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHILO (Glucose-1-phosphate adenylyltransferase OS=Rhizobium loti GN=glgC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 66/247 (26.72%), Postives = 114/247 (46.15%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXG 692
            AD+TV C+ +    A+ +G+M +D    II F EKP  P               +P    F  +ASMG+Y+F+T  L+  LR        S DFG +IIP  V+     A  F             YW D+GT+ ++++AN+ LT+   + + YD   P +T A   PP K        R   V +++S  C +   +++ S++   +R+ S    ++ +M+   +    +++  ++ +  V I  G
Sbjct:  155 ADVTVGCLEVPRMEATGFGVMHVDAKDNIIAFVEKPADPP-------------GIPGNPDFA-LASMGIYVFKTKFLMEQLRRDAAEPGSSRDFGKDIIPYIVQHGKAIAHRFTKSCVRSTAENEAYWRDVGTVDAYWEANIDLTDITPELDLYDRDWPIWTYAELKPPAKFVHDEDGRRGSAVSSLVSGDCIVSGATLKKSLIFTGARINSYSTLEEVVMLPDVHVGRNAKLKRVVIDHGVRIPEG 387          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_THEAB8.928e-2128.76Glucose-1-phosphate adenylyltransferase OS=Thermos... [more]
GLGC_THEYD1.166e-2027.57Glucose-1-phosphate adenylyltransferase OS=Thermod... [more]
GLGC_SHEB91.166e-2031.36Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESW1.989e-2030.14Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEPC1.989e-2030.14Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_THEM42.598e-2028.32Glucose-1-phosphate adenylyltransferase OS=Thermos... [more]
GLGC_DEIRA2.598e-2026.91Glucose-1-phosphate adenylyltransferase OS=Deinoco... [more]
GLGC_CLOTH2.598e-2027.78Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_RHOP53.393e-2027.13Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_RHILO3.393e-2026.72Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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