FC923284

Overview
NameFC923284
Unique NameFC923284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHIME (Glucose-1-phosphate adenylyltransferase OS=Rhizobium meliloti GN=glgC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 69/225 (30.67%), Postives = 106/225 (47.11%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGL-SMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVR----SRLESGVEFQD 605
            AD+TV C+ +    A+ +G+M +D + +II F EKP  P            G+   PD      +ASMG+Y+F T  L+++LR   +    S DFG +IIP  V+     A  F             YW D+GTI +++ AN+ LT    + + YD   P +T +   PP K        R     +++S  C +   ++  S++  GVR    SRLE+ V   D
Sbjct:  154 ADVTVGCLEVPRMEATGFGVMHVDNADRIIAFVEKPADPP-----------GIPGNPDMA----LASMGIYVFHTKFLMDMLRRDAADPKSSRDFGKDIIPYIVEHGKAVAHRFTHSCVRSDFEREAYWRDVGTIDAYWQANIDLTHITPELDIYDSTWPIWTFSEIKPPAKFVHDDENRRGSATSSLVSGDCIISGAALNRSLLFTGVRVNSYSRLENAVVLPD 363          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHOSR (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus sp. (strain RHA1) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 66/244 (27.05%), Postives = 113/244 (46.31%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND------------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTK-VDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQ 695
            A +TV+ + +  S A  +G +  D SG+I+QF EKP  P                PD     + ASMG Y+F T VL++ +R+    S+   D G +IIPA V+      + F D            YW D+GT+ +F+DA++ L      F  Y+ R P       L P K V      ++++  GC L   +V++S++     ++SG   + +++M        + +   + ++ V +G G+
Sbjct:  146 AGVTVAGIRVPRSEAFAFGCIDSDESGRIVQFLEKPAHPP-------------GTPDDPNMTF-ASMGNYVFTTKVLVDAIRADSENSDSDHDMGGDIIPALVEAGEASVYDFKDNIVPGATDRDRGYWRDVGTLDAFYDAHMDLVSVHPIFNLYNRRWPIRGETENLAPAKFVQGGLAQESVVGAGCILSAATVRNSVLSSNVMVDSGATVEGSVLMPGVRIGKGAVVRRAILDKNVVVGDGE 375          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHOOB (Glucose-1-phosphate adenylyltransferase OS=Rhodococcus opacus (strain B4) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 66/244 (27.05%), Postives = 113/244 (46.31%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND------------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTK-VDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAERKVPIGXGQ 695
            A +TV+ + +  S A  +G +  D SG+I+QF EKP  P                PD     + ASMG Y+F T VL++ +R+    S+   D G +IIPA V+      + F D            YW D+GT+ +F+DA++ L      F  Y+ R P       L P K V      ++++  GC L   +V++S++     ++SG   + +++M        + +   + ++ V +G G+
Sbjct:  146 AGVTVAGIRVPRSEAFAFGCIDSDESGRIVQFLEKPAHPP-------------GTPDDPNMTF-ASMGNYVFTTKVLVDAIRADSENSDSDHDMGGDIIPALVEAGEASVYDFKDNVVPGATDRDRGYWRDVGTLDAFYDAHMDLVSVHPIFNLYNRRWPIRGETENLAPAKFVQGGLAQESVVGAGCILSAATVRNSVLSSNVMVDSGATVEGSVLMPGVRIGKGAVVRRAILDKNVVVGDGE 375          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_RHIRD (Glucose-1-phosphate adenylyltransferase OS=Rhizobium radiobacter GN=glgC PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 67/220 (30.45%), Postives = 103/220 (46.82%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIV--GVR----SRLESGV 593
            AD+T+ C+ +    A+ +G+M ++   +II F EKP  P               +P    F  +ASMG+Y+F T  L+  +R   +    S DFG +IIP  V+     A  F D           YW D+GTI +++ AN+ LT+     + YD   P +T A   PP K        R   V +++S  C +   ++  S++  GVR    SRLE+ V
Sbjct:  154 ADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPP-------------GIPGNEGFA-LASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAV 359          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_FRAP2 (Glucose-1-phosphate adenylyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 66/223 (29.60%), Postives = 105/223 (47.09%), Query Frame = 3
Query:   21 TVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPK--GPDLKGM--QCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTS------ARFLPPTKVDRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            TV CV + +  A  +G+M ID   +I  F EKPK   P + G   +C                  ASMG+Y+F +D L +LL    ++   S+DFG +IIP  V ++   A  F+            YW D+GTI +F++ANL L     +   YD   P +T+      A+F+P  K +   I + + S GC +    +  S++  + R+ +G E    ++M
Sbjct:  158 TVGCVEIAEEEAYAFGIMGIDEDRKITSFIEKPKKNAPTIPGTTDRC-----------------YASMGIYIFNSDYLYDLLEEDIANKESSHDFGKDIIPRVVSENQALAHPFSMSCVPRGEGIEPYWRDVGTIDAFWEANLDLAANMPELNIYDKDWPVWTAQEQLPPAKFVPDRKGNHGVITNTLTSGGCIVLGSQISKSLMFSKVRVSAGCEIDQCVIM 363          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_ENTS8 (Glucose-1-phosphate adenylyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.199e-19
Identity = 65/222 (29.28%), Postives = 101/222 (45.50%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A  TV+C+P+  + A  +G+M +D + ++I F EKP  P    M CD T              +ASMG+Y+F  D L  LL     +   S+DFG +IIP         A  F             YW D+GT+++++ ANL L     + + YD   P  T    LPP K   DR       +++++S GC +    V  S++  R R+ S       +++
Sbjct:  161 ARCTVACLPVPVAEARAFGVMAVDENSKVIDFVEKPANPP--SMPCDDTKA------------LASMGIYIFDADYLYELLEEDDENESSSHDFGKDIIPKVTYSGEAYAHPFPLSCVQSDPNAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQDWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRVNSFCNIDSAVLL 368          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SHEON (Glucose-1-phosphate adenylyltransferase OS=Shewanella oneidensis GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 68/219 (31.05%), Postives = 109/219 (49.77%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            AD+TVSC+ +  + A+  +G+M++D   +I+ F EKP+ P      C         P+      +ASMG Y+F T+ L   L+    +     DFG +IIP+ ++ H V A+ F         YW D+GT+ SF+ AN+ L         YD + P +T    LPP K        R   VD+IIS GC +   +V+ S++    R+ S    +D++++
Sbjct:  154 ADMTVSCLEVPVAEAAGAFGVMEVDDDMRILGFEEKPQLPK----HCPGN------PEKC----LASMGNYVFNTEFLFEQLKKDAQNAESDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWLANMELLSPTPALNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSVVEDSVVL 358          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SALTY (Glucose-1-phosphate adenylyltransferase OS=Salmonella typhimurium GN=glgC PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 68/223 (30.49%), Postives = 105/223 (47.09%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP-DAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A  TV+C+P+    A+ +G+M +D S +II F EKP  P              +MP DA K   +ASMG+Y+F  D L  LL +       S+DFG +IIP   ++    A  F             YW D+GT+++++ ANL L     + + YD   P  T    LPP K   DR       +++++S GC +    V  S++  R R+ S       +++
Sbjct:  161 ARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANPP-------------AMPGDASKS--LASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRINSFCNIDSAVLL 368          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SALSV (Glucose-1-phosphate adenylyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 68/223 (30.49%), Postives = 105/223 (47.09%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP-DAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A  TV+C+P+    A+ +G+M +D S +II F EKP  P              +MP DA K   +ASMG+Y+F  D L  LL +       S+DFG +IIP   ++    A  F             YW D+GT+++++ ANL L     + + YD   P  T    LPP K   DR       +++++S GC +    V  S++  R R+ S       +++
Sbjct:  161 ARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANPP-------------AMPGDASKS--LASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRINSFCNIDSAVLL 368          
BLAST of FC923284 vs. ExPASy Swiss-Prot
Match: GLGC_SALPK (Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 68/223 (30.49%), Postives = 105/223 (47.09%), Query Frame = 3
Query:   12 ADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP-DAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPRTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMM 617
            A  TV+C+P+    A+ +G+M +D S +II F EKP  P              +MP DA K   +ASMG+Y+F  D L  LL +       S+DFG +IIP   ++    A  F             YW D+GT+++++ ANL L     + + YD   P  T    LPP K   DR       +++++S GC +    V  S++  R R+ S       +++
Sbjct:  161 ARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANPP-------------AMPGDASKS--LASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLVSGGCIISGSVVVQSVLFPRVRINSFCNIDSAVLL 368          
The following BLAST results are available for this feature:
BLAST of FC923284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGC_RHIME1.684e-1930.67Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHOSR2.199e-1927.05Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]
GLGC_RHOOB2.199e-1927.05Glucose-1-phosphate adenylyltransferase OS=Rhodoco... [more]
GLGC_RHIRD2.199e-1930.45Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_FRAP22.199e-1929.60Glucose-1-phosphate adenylyltransferase OS=Francis... [more]
GLGC_ENTS82.199e-1929.28Glucose-1-phosphate adenylyltransferase OS=Enterob... [more]
GLGC_SHEON2.872e-1931.05Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SALTY2.872e-1930.49Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_SALSV2.872e-1930.49Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_SALPK2.872e-1930.49Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]

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Properties
Property NameValue
Genbank descriptionC31703B05EF StrClemenN Citrus clementina cDNA clone C31703B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923284 ID=FC923284; Name=FC923284; organism=Citrus clementina; type=EST; length=698bp
ATCGACCAAAAGCTGATATTACAGTCTCATGTGTACCAATGGATGACAGC
CGTGCATCAGATTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCAT
CCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTG
ATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTAC
ATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCT
CTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTC
CAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTAC
TGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATGCCAATTTGGCCCT
CACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCCAGGACACCTTTCT
ATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGATCGATGCAAGATA
GTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAGAATGTTCGGTGCA
ACATTCCATAGTAGGCGTGCGCTCACGTTTAGAGTCTGGTGTTGAGTTTC
AGGATACTATGATGATGGGTGCAGACTACTATCAAACTGAATCTGAAATT
GCATCTCTACTTGCGGAAAGGAAGGTTCCAATTGGTNGTGGACAGAAT
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