FC923287

Overview
NameFC923287
Unique NameFC923287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRATH (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRATF (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_COLP3 (Aminomethyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.220e-20
Identity = 60/130 (46.15%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            KT LH  H+A+G KMV F GW MPI Y   I E     R +  +FDVSHM  + ++G D   FL +LVI DVA LA PG    T   NE GG IDD +I    D    LVVN+  R KDLA +      F
Sbjct:    4 KTVLHAKHLASGAKMVDFFGWDMPINYGSQIEEHHA-VRTDAGMFDVSHMTIVDVQGADAKAFLRRLVINDVAKLATPGKALYTGMLNEEGGVIDDLIIYFFSDTDYRLVVNSATRVKDLAWMTKQSTGF 132          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_XYLFM (Aminomethyltransferase OS=Xylella fastidiosa (strain M12) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 654
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +
Sbjct:    2 IKKTILNDTHRALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR 135          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_XYLFA (Aminomethyltransferase OS=Xylella fastidiosa GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 654
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +
Sbjct:    2 IKKTILNDTHRALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR 135          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRATT (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHMAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRAT1 (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHMAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_FRAP2 (Aminomethyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 51/132 (38.64%), Postives = 72/132 (54.55%), Query Frame = 1
Query:  259 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 654
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R+N  +FDVSHM  + ++GKD   FL  ++  DVA L  G        N   G +DD +  K+  ++  +VVNAG R+ D+A    + +    K
Sbjct:    3 KTPLYESHLAANAKMVDFSGWSMPINYGSQIQEHN-NVRENCGVFDVSHMLAVDIQGKDAEKFLRHILANDVAKLEAGKAQYGCMLNHEAGIVDDLITYKIDSENFRIVVNAGNRESDVAWFRENSQDLDVK 133          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_STAAB (Aminomethyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  244 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 669
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAARYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGVIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_SERP5 (Aminomethyltransferase OS=Serratia proteamaculans (strain 568) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.081e-20
Identity = 57/127 (44.88%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 633
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L+G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA IE H
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHA-VRQDAGMFDVSHMTIVDLRGARTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEEH 128          
The following BLAST results are available for this feature:
BLAST of FC923287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_FRATH1.220e-2038.76Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATF1.220e-2038.76Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_COLP31.220e-2046.15Aminomethyltransferase OS=Colwellia psychrerythrae... [more]
GCST_XYLFM1.593e-2040.00Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_XYLFA1.593e-2040.00Aminomethyltransferase OS=Xylella fastidiosa GN=gc... [more]
GCST_FRATT1.593e-2039.53Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRAT11.593e-2039.53Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRAP21.593e-2038.64Aminomethyltransferase OS=Francisella philomiragia... [more]
GCST_STAAB2.081e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_SERP52.081e-2044.88Aminomethyltransferase OS=Serratia proteamaculans ... [more]

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Properties
Property NameValue
Genbank descriptionC31703B09EF StrClemenN Citrus clementina cDNA clone C31703B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923287 ID=FC923287; Name=FC923287; organism=Citrus clementina; type=EST; length=719bp
GATATAAAGCCCATATTTTTACTTCTCTCTCTTCCTATCCACCGCTCTCT
CTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCCAGATTTGCTTGTTTTT
GAGACAAAAAAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGA
GGAGGGAGTCTGTGGCAGCTTGGACAATCAATCACCCGTCGTTTGGCTCA
GGCTGATAAGAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAA
ACCTGAAAAAAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAG
ATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAAT
TATGGAATCTACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCT
CCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTT
GAGAAGCTTGTGATTGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGAC
TCTTACAGTCTTTACAAATGAAAATGGGGGTGCAATCGATGATTCGGTTA
TTACCAAGGTGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGC
AGGGATAAGGATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGC
CAAAGGTGGGGATGTCTCATGGCACATCACGATGAGAGATCTCTTCTTGC
CTTTCAGGCCCCTTGCTGC
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