FC923287

Overview
NameFC923287
Unique NameFC923287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_STAA9 (Aminomethyltransferase OS=Staphylococcus aureus (strain JH9) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  244 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 669
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_STAA8 (Aminomethyltransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  244 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 669
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_STAA3 (Aminomethyltransferase OS=Staphylococcus aureus (strain USA300) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  244 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 669
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_STAA2 (Aminomethyltransferase OS=Staphylococcus aureus (strain JH1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  244 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 669
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_STAA1 (Aminomethyltransferase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  244 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 669
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_NITOC (Aminomethyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 54/131 (41.22%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            K TA+ D H + G ++V FAGW MP+ Y   + E     RQ   +FDVSHM  + LKG+   PFL +L+  +V  L  PGT   +   N  GG IDD ++  + +    +V NAG RDK LA IE+H   F
Sbjct:    3 KHTAIFDLHRSAGARLVDFAGWDMPLHYGSQVAEHQA-VRQGVGIFDVSHMTVIELKGEKVRPFLHQLLANNVDRLTVPGTALYSCMLNTEGGVIDDLIVYLMAEQEFRVVSNAGTRDKVLAWIESHAAPF 132          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_BACHD (Aminomethyltransferase OS=Bacillus halodurans GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  253 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 633
            LKKT L D +   GGK++ F GW++P+Q+  SI E     R    LFDVSHM  + + G   + +L++LV  DV+ +  G    T    ENGG +DD +I +  +D   LV+NA   DKD+A +E H
Sbjct:    4 LKKTPLFDLYEQYGGKVIDFGGWALPVQFS-SIKEEHEAVRTKAGLFDVSHMGEVEVTGAQALNYLQRLVTNDVSKIKDGQAQYTAMCYENGGTVDDLLIYRRSEDQYLLVINAANIDKDIAWMEKH 129          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_NATTJ (Aminomethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 48/124 (38.71%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIE 627
            +KT L+D H   GGK++ F GW +P+Q+   I++  +  R+   LFDVSHM  + ++G   + +L+K+V  DVA L PG    T    ENGG +DD +I K+ ++   L+VNA   DKD   ++
Sbjct:    5 QKTPLYDIHKERGGKIIDFGGWYLPVQFT-GIIDEVMTTRKEAGLFDVSHMGEIIVEGPKALEYLQKMVPNDVARLKPGKILYTPMCYENGGTVDDFLIYKMDENKFLLIVNAANTDKDFEWLQ 127          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_ERWCT (Aminomethyltransferase OS=Erwinia carotovora subsp. atroseptica GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  256 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 645
            K+T L+  H+A+G KMV F GW MP+ Y   + E  +  R++  +FDVSHM  + L G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA IE H  +F
Sbjct:    3 KQTPLYQQHLADGAKMVDFHGWMMPLHYGSQLDEHHI-VRRDAGIFDVSHMTIVDLHGVRTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEQHAAAF 132          
BLAST of FC923287 vs. ExPASy Swiss-Prot
Match: GCST_THEP3 (Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  247 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGAIDDSVITKVKDDHIYLVVNAGCRDKD 612
            +NLKKT L D +    GK++ FAGW++P+Q++  I E     R    LFDVSHM  +++KG++   FL+ L+  D++ L       T   N NGG +DD ++ K  D+H  LVVNA   +KD
Sbjct:    2 DNLKKTPLFDLYKKYNGKIIDFAGWALPVQFESIISEHEA-VRNAAGLFDVSHMGEITVKGREAFNFLQNLITNDLSKLKDNQVFYTFMCNYNGGVVDDLLVYKYSDEHFLLVVNAANIEKD 122          
The following BLAST results are available for this feature:
BLAST of FC923287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_STAA93.549e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAA83.549e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAA33.549e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAA23.549e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAA13.549e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_NITOC3.549e-2041.22Aminomethyltransferase OS=Nitrosococcus oceani (st... [more]
GCST_BACHD3.549e-2040.16Aminomethyltransferase OS=Bacillus halodurans GN=g... [more]
GCST_NATTJ4.635e-2038.71Aminomethyltransferase OS=Natranaerobius thermophi... [more]
GCST_ERWCT6.053e-2041.98Aminomethyltransferase OS=Erwinia carotovora subsp... [more]
GCST_THEP37.906e-2040.16Aminomethyltransferase OS=Thermoanaerobacter pseud... [more]

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Properties
Property NameValue
Genbank descriptionC31703B09EF StrClemenN Citrus clementina cDNA clone C31703B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923287 ID=FC923287; Name=FC923287; organism=Citrus clementina; type=EST; length=719bp
GATATAAAGCCCATATTTTTACTTCTCTCTCTTCCTATCCACCGCTCTCT
CTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCCAGATTTGCTTGTTTTT
GAGACAAAAAAGAAAACCCCATCTCTATATTTATATCGAATAAAATGAGA
GGAGGGAGTCTGTGGCAGCTTGGACAATCAATCACCCGTCGTTTGGCTCA
GGCTGATAAGAAGACTATAGCTCGTAGACACTTTGCCTCAGATGCTGAAA
ACCTGAAAAAAACTGCCCTTCATGACTTTCATGTGGCTAATGGTGGAAAG
ATGGTTCCATTTGCTGGATGGAGCATGCCTATTCAGTACAAGGACTCAAT
TATGGAATCTACTTTGAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCT
CCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTT
GAGAAGCTTGTGATTGCTGATGTTGCTGGACTTGCCCCAGGAACTGGGAC
TCTTACAGTCTTTACAAATGAAAATGGGGGTGCAATCGATGATTCGGTTA
TTACCAAGGTGAAGGATGATCACATATACCTTGTTGTGAATGCTGGCTGC
AGGGATAAGGATCTTGCTCACATTGAGGCACATATGAAGAGTTTCACAGC
CAAAGGTGGGGATGTCTCATGGCACATCACGATGAGAGATCTCTTCTTGC
CTTTCAGGCCCCTTGCTGC
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