FC923289

Overview
NameFC923289
Unique NameFC923289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923289 vs. ExPASy Swiss-Prot
Match: B3GT5_ARATH (Probable beta-1,3-galactosyltransferase 5 OS=Arabidopsis thaliana GN=B3GALT5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.416e-31
Identity = 67/159 (42.14%), Postives = 93/159 (58.49%), Query Frame = 1
Query:    1 AENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVXXXXXXXXXXXXXXXXRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGD-GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDNRFCCSS 474
            +E+ +  DF  L+ H E    L  K K FFS+AV  WDAEFYVK+                  R +   YIGCMKSG V+T++  ++ EPE+WKFG+ G  YFRHA G I+ +S++LA YI+ N   L  YA++D ++GSW +G+     DD  FCC +
Sbjct:  187 SEDAQYNDFFRLD-HVEGYYNLSAKTKSFFSSAVAKWDAEFYVKIDDDVHVNLGTLASTLASHRSKPRVYIGCMKSGPVLTKKTAKYREPEFWKFGEEGNKYFRHATGQIYAISKDLATYISNNQPILHKYANEDVTLGSWFIGLEVEQIDDRNFCCGT 344          
BLAST of FC923289 vs. ExPASy Swiss-Prot
Match: B3GTD_ARATH (Probable beta-1,3-galactosyltransferase 13 OS=Arabidopsis thaliana GN=B3GALT13 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 48/151 (31.79%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   22 DFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVXXXXXXXXXXXXXXXXRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGD--GKSYFRHAAGSIFVLSRN-LAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDNRFC 465
            DF++L+  EE   +LP K   FF  A  ++D+EFYVK                 + RG    Y+GCMK G V T+   +WYEP      D  GK YF HA G I+ LS + +   + + + S + ++++D ++G+WM+ +   +++ +  C
Sbjct:  151 DFILLDIEEE-YSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERGHSQTYLGCMKKGPVFTDPKLKWYEP----LADLLGKEYFLHAYGPIYALSADVVTSLVALKNNSFRMFSNEDVTIGAWMLAMNVNHENLHTLC 296          
BLAST of FC923289 vs. ExPASy Swiss-Prot
Match: B3GTC_ARATH (Probable beta-1,3-galactosyltransferase 12 OS=Arabidopsis thaliana GN=B3GALT12 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = 1
Query:    4 ENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVXXXXXXXXXXXXXXXXRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGD--GKSYFRHAAGSIFVLSRNL-AQYININSASLKTYAHDDTSVGSWMMGVRATYKDDNRFC 465
            E +E +DF++L+  EE    LP K   FF  A ++++A++YVK                   R     YIGCMK G V+T+   +WYE    K G+  G  YF HA G I+VLS  + A      + SL+ + ++D ++GSWM+ +   ++D+   C
Sbjct:  171 EIKEYRDFVLLDTEEE-YIRLPYKTLAFFKAAFKLFEADYYVKADDDIYLRPDRLATLLANERLHSQTYIGCMKKGPVITDPKLKWYE----KQGNLIGNEYFLHAYGPIYVLSAEIVASLAAARNGSLRMFNNEDVTIGSWMLAMDVHHEDNRALC 322          
BLAST of FC923289 vs. ExPASy Swiss-Prot
Match: B3GTE_ARATH (Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.629e-17
Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = 1
Query:    4 ENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVXXXXXXXXXXXXXXXXRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRN-LAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDNRFC 465
            E  E  DF++L+  EE   +LP K   FF  A  ++D+EFYVK                 + R     Y+GC+K G V T+   +WYEP       GK YF HA G I+ LS + +A  + + + S + + ++D ++G+WM+ +   +++ +  C
Sbjct:  147 EIAEYDDFVLLDIEEE-YSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERSHSQTYLGCLKKGPVFTDPKLKWYEPLSHLL--GKEYFLHAYGPIYALSADVVASLVALKNNSFRMFNNEDVTIGAWMLAMNVNHENHHILC 298          
The following BLAST results are available for this feature:
BLAST of FC923289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
B3GT5_ARATH4.416e-3142.14Probable beta-1,3-galactosyltransferase 5 OS=Arabi... [more]
B3GTD_ARATH3.282e-1831.79Probable beta-1,3-galactosyltransferase 13 OS=Arab... [more]
B3GTC_ARATH7.312e-1833.12Probable beta-1,3-galactosyltransferase 12 OS=Arab... [more]
B3GTE_ARATH1.629e-1730.97Probable beta-1,3-galactosyltransferase 14 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC31703C03EF StrClemenN Citrus clementina cDNA clone C31703C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923289 ID=FC923289; Name=FC923289; organism=Citrus clementina; type=EST; length=709bp
GCAGAAAATCGTGAGACGAAGGATTTCCTGATTCTTGAAGGTCATGAGGA
GGCTCAAGAAGAACTTCCTAAGAAAGCAAAATTCTTCTTCAGTACTGCGG
TTCAAATTTGGGATGCAGAATTCTATGTAAAAGTTGATGACAATATTGAC
CTCGATTTGGAGGGACTGATTGGACTTCTTGATCGTAGTCGTGGTCAAGA
GAGTGCTTATATTGGATGCATGAAGTCAGGAGATGTTGTAACTGAAGAGG
GAAGGCAATGGTATGAACCTGAATGGTGGAAGTTTGGGGATGGGAAATCG
TATTTCCGACATGCAGCTGGTTCAATTTTTGTTCTCTCCAGAAATTTGGC
TCAGTATATCAACATAAACAGTGCATCTCTGAAGACTTATGCTCACGATG
ATACATCTGTTGGGTCCTGGATGATGGGTGTCCGAGCAACCTACAAAGAT
GATAATCGTTTTTGCTGCAGCAGCATTAACCGAGATAAGGTTTGTTCCAT
GTTTTGATCAAAGGAACAGCTTCTCCAATCAGGATGCAGGCCCCTTTCTG
GGTTGTTGATGCCATTGAACAGCATTGTTTTTGCAGCCAGTCACGCACAC
ATCTATTGCATATTATGGTGCGGCTTTTGTGAAGTAGCATTGGATCATTC
TTTTCAGATGTAGAGATTGATNAGCAATTATTTTTTAGGAAAATCAAGGC
TAATCTAAC
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