FC923324

Overview
NameFC923324
Unique NameFC923324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.758e-40
Identity = 82/188 (43.62%), Postives = 121/188 (64.36%), Query Frame = 2
Query:  125 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +++E +VR ++ +    ++E ++   ++  L+      G V+  LD++R IV+  +GPR+VV     +DK KL  GTRV LD  T+ I+  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PELF  VGI PPKGVLLYGPPG GKTL + +IA  ++A F++VV S ++ KY
Sbjct:   24 RQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKAIAHEVNATFIRVVGSELVRKY 211          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 80/197 (40.61%), Postives = 125/197 (63.45%), Query Frame = 2
Query:   98 EYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +Y K    ++ +E   + ++      ++E  +   +++ L+S   ++G V   L++ R++VK+S+GP++VV     +++E+L  G RV L+  TL I+  LP   DP+VY    E+   VSY  +GGL  QI E+RE++ELPL+ PELF  VGI+PPKGVLLYGPPGTGKTL + ++A+   A F++VV S  + KY
Sbjct:   19 DYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRVVGSEFVQKY 215          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.181e-39
Identity = 79/188 (42.02%), Postives = 121/188 (64.36%), Query Frame = 2
Query:  125 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +++E +VR ++ +    ++E ++   ++  L+      G V+  LD +R IV+  +GPR+VV     +D++KL  GTRV LD  T+ ++  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PELF  VGI PPKGVLLYGPPG GKTL + ++A  ++A F++VV S ++ KY
Sbjct:   27 RQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKY 214          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 78/188 (41.49%), Postives = 126/188 (67.02%), Query Frame = 2
Query:  125 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +++E +VR+++ +    ++E ++   ++  L+      G V+  LD+ER IV+  +GPR+VV     ++++KL  G RV LD  T+ I+  LP E DP V      +   V+Y+ +GGL  Q++ELRE+IELPL +PELF +VGI+PPKGVLLYGPPG GKTL + ++A++++A F++VV S ++ K+
Sbjct:   25 RQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKF 212          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 81/212 (38.21%), Postives = 130/212 (61.32%), Query Frame = 2
Query:   53 MSEGEDAVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            M + E++  +RN M + RK       +E     ++       +E      +++  ++   +I  V   LD+ R+ VK+++GP +V+     +D+++L  G RV L+  T +I+  LP E DPVV  M  E+  +VSY  +GGL +Q+RE++E++ELPL  PELF ++GI+PPKGVLLYGPPGTGKTL + ++A   +A F+K+V+S  + KY
Sbjct:   21 MLKEENSKTKRNLMWKIRK-------LEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVRKY 225          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 82/214 (38.32%), Postives = 133/214 (62.15%), Query Frame = 2
Query:   53 MSEGEDAVRRRNAMTEYRKKLLQHK--EIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            + E  ++V+ R    E R   L+ +  +IES  R ++      ++E  K + +L  +++   IIG V+  + N+R+IV++S+GP+++V     +D++KL  G +V L+  TL I   +P   +P V  M   +   V Y  +GGL +QI+EL+E++ELPL+ PE F R+GI+PPKGVLLYG PGTGKTL + ++A   +A F++VV S ++ KY
Sbjct:   20 LGESTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKY 233          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 78/188 (41.49%), Postives = 121/188 (64.36%), Query Frame = 2
Query:  125 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +++E +VR ++ +    ++E ++   ++  L+      G V+  LD++R IV+  +GPR+VV     ++++KL  G RV LD  T+ I+  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PELF  VGI PPKGVLLYGPPG GKTL + ++A  ++A F++VV S ++ KY
Sbjct:   27 RQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGCGKTLMAKALAHEVNATFIRVVGSELVRKY 214          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 79/190 (41.58%), Postives = 120/190 (63.16%), Query Frame = 2
Query:  119 QHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            Q +++ES  R V+      ++E  K + +++ L+S   +IG V   +DN R+IV++S+GPR++V     +D + L  G R  L+  +L I+  LP   D  +Y M   +    +Y  +GGL  QI E+RE++ELPL  P+LF +VGI PPKGVLLYGPPGTGKTL + ++A   +A+FL+VV S ++ KY
Sbjct:   38 QFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKY 227          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 82/214 (38.32%), Postives = 133/214 (62.15%), Query Frame = 2
Query:   53 MSEGEDAVRRRNAMTEYRKKLLQHK--EIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            + E  ++V+ R    E R   L+ +  +IES  R ++      ++E  K + +L  +++   IIG V+  + N+R+IV++S+GP+++V     +D++KL  G +V L+  TL I   +P   +P V  M   +   V Y  +GGL +QI+EL+E++ELPL +PE F R+GI+PPKGVLLYG PGTGKTL + ++A   +A F++VV S ++ KY
Sbjct:   20 LGETTESVQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRTNATFIRVVGSELVQKY 233          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 76/188 (40.43%), Postives = 125/188 (66.49%), Query Frame = 2
Query:  125 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +++E +VR+++ +    ++E ++   ++  L+      G V+  LD++R IV+  +GPR+VV     ++++KL  G+RV LD  T+ I+  LP E DP V      +   V+Y  +GGL  Q+ ELRE++ELPL +PELF +VGI+PPKGVLLYGPPG GKTL + ++A++++A F++VV S ++ K+
Sbjct:   25 RQLELQVRTLEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIEPPKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKF 212          
The following BLAST results are available for this feature:
BLAST of FC923324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PSMR_PYRFU3.758e-4043.62Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_ARCFU8.371e-4040.61Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_PYRHO3.181e-3942.02Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRKO7.087e-3941.49Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_METTH7.087e-3938.21Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METAC9.256e-3938.32Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_PYRAB1.579e-3841.49Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_METMJ1.579e-3841.58Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METMA1.579e-3838.32Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_THEGJ2.062e-3840.43Proteasome-activating nucleotidase OS=Thermococcus... [more]

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Properties
Property NameValue
Genbank descriptionC31703G03EF StrClemenN Citrus clementina cDNA clone C31703G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923324 ID=FC923324; Name=FC923324; organism=Citrus clementina; type=EST; length=688bp
GAAGCTTACGAGACTCGATTGATTTGCTACATCAATATCTCCGACTGCAA
CGATGAGCGAAGGAGAAGACGCCGTTAGACGCCGTAATGCCATGACGGAG
TACCGTAAGAAGCTACTCCAGCACAAAGAAATCGAATCTAGAGTTCGATC
TGTTAAGGAGAATTTGAGAGCTGCAAAGAAGGAGTTCAACAAAACAGAAG
ATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGAGAAGTTCTC
AGACCTCTTGACAATGAACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCG
TTATGTGGTTGGATGCCGCAGCAAAGTGGATAAAGAGAAGTTGACTTCGG
GAACAAGAGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTT
CCTCGTGAAGTTGATCCGGTTGTATATAACATGTTGCATGAGGATCCGGG
TAATGTTAGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAAT
TAAGGGAATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGA
GTTGGAATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAAC
TGGCAAGACATTATTNAGCACGAGCATTGCCAGTAACATAGATGCAAATT
TTCTGAAGGTGGTTTCAAGTGCCATTATTGATAAGTAC
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