FC923324

Overview
NameFC923324
Unique NameFC923324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PEX6_MOUSE (Peroxisome assembly factor 2 OS=Mus musculus GN=Pex6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  452 NVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +VS+  VGGL D  +E+ E+I+LPL +PEL L +G++   G+LL+GPPGTGKTL + ++A+     FL V    +I+ Y
Sbjct:  702 SVSWHDVGGLQDVKKEILETIQLPLEHPEL-LSLGLRR-SGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMY 778
The following BLAST results are available for this feature:
BLAST of FC923324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PEX6_MOUSE8.165e-1145.57Peroxisome assembly factor 2 OS=Mus musculus GN=Pe... [more]

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Properties
Property NameValue
Genbank descriptionC31703G03EF StrClemenN Citrus clementina cDNA clone C31703G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923324 ID=FC923324; Name=FC923324; organism=Citrus clementina; type=EST; length=688bp
GAAGCTTACGAGACTCGATTGATTTGCTACATCAATATCTCCGACTGCAA
CGATGAGCGAAGGAGAAGACGCCGTTAGACGCCGTAATGCCATGACGGAG
TACCGTAAGAAGCTACTCCAGCACAAAGAAATCGAATCTAGAGTTCGATC
TGTTAAGGAGAATTTGAGAGCTGCAAAGAAGGAGTTCAACAAAACAGAAG
ATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGAGAAGTTCTC
AGACCTCTTGACAATGAACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCG
TTATGTGGTTGGATGCCGCAGCAAAGTGGATAAAGAGAAGTTGACTTCGG
GAACAAGAGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTT
CCTCGTGAAGTTGATCCGGTTGTATATAACATGTTGCATGAGGATCCGGG
TAATGTTAGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAAT
TAAGGGAATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGA
GTTGGAATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAAC
TGGCAAGACATTATTNAGCACGAGCATTGCCAGTAACATAGATGCAAATT
TTCTGAAGGTGGTTTCAAGTGCCATTATTGATAAGTAC
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