FC923324

Overview
NameFC923324
Unique NameFC923324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.663e-37
Identity = 77/198 (38.89%), Postives = 127/198 (64.14%), Query Frame = 2
Query:   95 TEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            TE R++L   ++IE+  R ++      ++E  K + +++ ++S   +IG V   +D  R+IV++S+GPR++VG    ++ E++  G R  L+  +L I+  LP   D  +Y M   +  +  Y  +GGL  QI E+RE++ELPL  PE+F ++GI+PPKGVLL+GPPGTGKTL + ++A   +A+FL+VV S ++ KY
Sbjct:   33 TELREQL---RQIEADKRYLETQKVRYEREVRKFKGEIEQMKSPPLVIGTVTDLIDENRVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKY 227          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.663e-37
Identity = 89/245 (36.33%), Postives = 135/245 (55.10%), Query Frame = 2
Query:   44 TATMSEGEDAVRRRNAMTEYRKKLLQHKE----------------IESRVRSVKENLRAAK--------------KEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            TA     E+  R   ++TE  +  LQ  E                +ESR   ++E +R A+              +E  K + + + L+S   IIG V+  +D  R+IV++S+GPR++V     V+ + +  G R  L+  +L I+  LP   D  VY M   D     Y+ +GGL +QI E+RE++ELPL  PELF ++GI+PPKGVLLYGPPGTGKTL + ++A   +A+F++VV S ++ KY
Sbjct:    8 TADPQTPEELCRLYRSLTEQLRDQLQRIETDKQDLESQMLERISSLESRNLELREQIRQAEADKRYIETQKIRYEREVRKLKSESEQLRSPPLIIGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKY 252          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 84/215 (39.07%), Postives = 135/215 (62.79%), Query Frame = 2
Query:   68 DAVRRRNAMTEYRKKLLQHKEIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            D  + +  + E+++K  Q  E+ES+V  +        +EN++  KKE    + +L  L+    I+G +L  ++  + +VK+S+GP ++V     VD E +  G RV L+  TL I+  LP+E D     M  E+  ++S+  +GGL++QIR+++E +ELPL NPELF +VGI PPKGVLLYGPPGTGKTL + ++A   +A+F++VV S ++ K+
Sbjct:   10 DIEKNKMDLKEFKEKT-QIAELESKVLRLELKNKDINRENVQI-KKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKF 222          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 84/215 (39.07%), Postives = 135/215 (62.79%), Query Frame = 2
Query:   68 DAVRRRNAMTEYRKKLLQHKEIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            D  + +  + E+++K  Q  E+ES+V  +        +EN++  KKE    + +L  L+    I+G +L  ++  + +VK+S+GP ++V     VD E +  G RV L+  TL I+  LP+E D     M  E+  ++S+  +GGL++QIR+++E +ELPL NPELF +VGI PPKGVLLYGPPGTGKTL + ++A   +A+F++VV S ++ K+
Sbjct:   10 DIEKNKMDLKEFKEKT-QIAELESKVLRLELKNKDVTRENVQI-KKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKF 222          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 84/215 (39.07%), Postives = 135/215 (62.79%), Query Frame = 2
Query:   68 DAVRRRNAMTEYRKKLLQHKEIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            D  + +  + E+++K  Q  E+ES+V  +        +EN++  KKE    + +L  L+    I+G +L  ++  + +VK+S+GP ++V     VD E +  G RV L+  TL I+  LP+E D     M  E+  ++S+  +GGL++QIR+++E +ELPL NPELF +VGI PPKGVLLYGPPGTGKTL + ++A   +A+F++VV S ++ K+
Sbjct:   10 DVEKNKMDLKEFKEKT-QIAELESKVLRLELKNKDISRENVQI-KKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKF 222          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.299e-36
Identity = 83/215 (38.60%), Postives = 135/215 (62.79%), Query Frame = 2
Query:   68 DAVRRRNAMTEYRKKLLQHKEIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            D  + +  + E+++K  Q  E+ES+V  +        +EN++  KKE    + +L  L+    I+G +L  ++  + +VK+S+GP ++V     VD + +  G RV L+  TL I+  LP+E D     M  E+  ++S+  +GGL++QIR+++E +ELPL NPELF +VGI PPKGVLLYGPPGTGKTL + ++A   +A+F++VV S ++ K+
Sbjct:   10 DIEKNKMDLKEFKEKT-QIAELESKVLRLELKNKDISRENVQI-KKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKF 222          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 78/186 (41.94%), Postives = 116/186 (62.37%), Query Frame = 2
Query:  131 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +E ++ S+ + L   +++ N  + +L+ L +   I   VL  L + ++IV++SSGP  +V   S +D +KL  G+ V L     TI+  LP   D  V +    +  NV YS +GGL++QI E+RE IELPL NPELF  +GI PPKGVLLYGPPGTGKTL + ++A+  +A F++VV+S    K+
Sbjct:   23 LEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFKEIGIDPPKGVLLYGPPGTGKTLLAKAVATESNATFIQVVASEFAQKF 208          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 73/190 (38.42%), Postives = 116/190 (61.05%), Query Frame = 2
Query:  119 QHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            Q +++ES  R ++      ++E  K + +++ L++   I+G +   +D+ R++V++S+GPR++V     V+   L +G R  L+  +L I+  LP   D  VY M   D    +Y  +GGL  QI E+RE++ELP+  P+LF ++GI PPKGVLLYGPPGTGKTL + ++A    A FL  V S ++ KY
Sbjct:   38 QIRQLESDKRYIETQKIRYEREVRKLKSEIEHLKTPPLIVGTITDIIDSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKY 227          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 75/208 (36.06%), Postives = 122/208 (58.65%), Query Frame = 2
Query:   65 EDAVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            E  +  R+ +   R+   Q  E+  RVRS+KE              +L+ LQ  G  +GEV++ +  +++++K S   +Y+V     ++ + LT G RV L   +  + + LP ++DP+V  M  E   + +Y  VGGL +QI+E++E IELP+ +PELF  +GI  PKGV++YGPPGTGKTL + ++A + D  F++V  S ++ KY
Sbjct:   37 EKEIVLRDKIENLRRLQAQRNELNGRVRSLKE--------------ELQQLQEPGSHVGEVVKVMGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 230          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.359e-34
Identity = 80/215 (37.21%), Postives = 132/215 (61.40%), Query Frame = 2
Query:   68 DAVRRRNAMTEYRKKLLQHKEIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            D  +    + E+++K     E+ES+V  +        +EN++  KKE    + +L  L+    I+G VL  ++  + +VK+S+GP ++V     V+ + +  G RV L+  TL ++  LP+E D     M  E+  ++ +  +GGL++QIR+++E +ELPL NPELF +VGI PPKGVLLYGPPGTGKTL + ++A   +A+F++VV S ++ K+
Sbjct:   10 DVQKNEMDLKEFKEKAYL-AELESKVLRLELKNKDITRENVQI-KKENEILKRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKF 222          
The following BLAST results are available for this feature:
BLAST of FC923324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PSMR_METPE8.663e-3738.89Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_METB68.663e-3736.33Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_METMP1.478e-3639.07Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM71.478e-3639.07Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM61.478e-3639.07Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM54.299e-3638.60Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_SULTO4.753e-3541.94Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_METHJ1.059e-3438.42Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS8_NAEFO1.059e-3436.0626S protease regulatory subunit 8 homolog OS=Naegl... [more]
PSMR_METVS2.359e-3437.21Proteasome-activating nucleotidase OS=Methanococcu... [more]

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Properties
Property NameValue
Genbank descriptionC31703G03EF StrClemenN Citrus clementina cDNA clone C31703G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923324 ID=FC923324; Name=FC923324; organism=Citrus clementina; type=EST; length=688bp
GAAGCTTACGAGACTCGATTGATTTGCTACATCAATATCTCCGACTGCAA
CGATGAGCGAAGGAGAAGACGCCGTTAGACGCCGTAATGCCATGACGGAG
TACCGTAAGAAGCTACTCCAGCACAAAGAAATCGAATCTAGAGTTCGATC
TGTTAAGGAGAATTTGAGAGCTGCAAAGAAGGAGTTCAACAAAACAGAAG
ATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGAGAAGTTCTC
AGACCTCTTGACAATGAACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCG
TTATGTGGTTGGATGCCGCAGCAAAGTGGATAAAGAGAAGTTGACTTCGG
GAACAAGAGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTT
CCTCGTGAAGTTGATCCGGTTGTATATAACATGTTGCATGAGGATCCGGG
TAATGTTAGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAAT
TAAGGGAATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGA
GTTGGAATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAAC
TGGCAAGACATTATTNAGCACGAGCATTGCCAGTAACATAGATGCAAATT
TTCTGAAGGTGGTTTCAAGTGCCATTATTGATAAGTAC
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