FC923324

Overview
NameFC923324
Unique NameFC923324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34
Identity = 83/227 (36.56%), Postives = 131/227 (57.71%), Query Frame = 2
Query:   44 TATMSEGEDAVRRRNAMTEYRKKLLQHK----EIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            T    E ++     N   +  K+ LQ K    E+ESR+  +        +ENL+  K E      +L  ++    I+G V+  +   +++VK+S+GP ++V     V+ + L  G RV L+  TLT++  LP   D     M  ++  NV Y  +GGL  Q++E+RE +ELPL +PELF +VGI+PPKG+LLYGPPGTGKTL + ++A+  +A F++VV S ++ K+
Sbjct:   19 TEEFKEEKEINDNSNLKNDLLKEELQEKARIAELESRILKLELEKKELERENLQLMK-ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 244          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34
Identity = 77/192 (40.10%), Postives = 117/192 (60.94%), Query Frame = 2
Query:  113 LLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            LL  +E  +    +K     A+++ +K +D    L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTL + ++A++  A FL+VV S +I KY
Sbjct:   75 LLMEEEFVANQERLKPQEEKAEEDRSKVDD----LRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 262          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34
Identity = 77/192 (40.10%), Postives = 117/192 (60.94%), Query Frame = 2
Query:  113 LLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            LL  +E  +    +K     A+++ +K +D    L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTL + ++A++  A FL+VV S +I KY
Sbjct:   75 LLMEEEFVANQERLKPQEEKAEEDRSKVDD----LRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 262          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 74/186 (39.78%), Postives = 115/186 (61.83%), Query Frame = 2
Query:  131 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            ++ +VRS+ +   + +KE    ++++  L S   I   VL  +D+ R++VK+S+GP  +V   + VD   L  G  V L+    TI+  LP   DP+V  M  E+   V +  VGGL +QIRE+ E++ LP+ NP LF  +GI PPKGVLL+GPPGTGKTL + ++A   +A F++VV S +++K+
Sbjct:   28 LKDKVRSLTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELVNKF 213          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 73/195 (37.44%), Postives = 124/195 (63.59%), Query Frame = 2
Query:  107 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            K+L +H E I+ +   +K+  R+ K+E  + ++++K +QSV  +IG+ +  +D    IV++S+G  YVV   S +D+EKL   + V L   +  ++  LP E D  +  +   +  +V+Y+ VGGL  Q +E+RE++ELPL   +L+ ++GI PP+GVLLYGPPGTGKT+   ++A++  A+F++V  S  + KY
Sbjct:   46 KRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKY 240          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 74/195 (37.95%), Postives = 120/195 (61.54%), Query Frame = 2
Query:  125 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV++P+D ++++VK     ++VV     VD   +T+  RV L   + T+ + LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTL + ++A + +  F++V  S ++ K+
Sbjct:   25 EELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKF 219          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 70/179 (39.11%), Postives = 115/179 (64.25%), Query Frame = 2
Query:  152 VKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +KE+ ++ K+E  + ++++K +QSV  +IG+ L  +D    IV +++G  YVV   S +D+E L     V L   +  ++  LP E D  +  +  ++  +VSY+ VGGL  Q +E+RE++ELPL   +L+ ++GI PP+GVLLYGPPGTGKT+   ++A++  ANF++VV S  + KY
Sbjct:   30 IKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQKY 208          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.997e-33
Identity = 71/207 (34.30%), Postives = 123/207 (59.42%), Query Frame = 2
Query:   68 DAVRRRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            D +   +  T+Y+K     + +E +   +K+  R  KKE+   ++++K +QSV  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  ++  +V YS +GG+  Q +E+RE++ELPL + EL+ ++GI+PP+GVL+YGPPG GKT+ + ++A +  A F++VV S  + KY
Sbjct:   30 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKY 236          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.997e-33
Identity = 73/186 (39.25%), Postives = 113/186 (60.75%), Query Frame = 2
Query:  131 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +E    + +E LR  + +  +    +  L+     +G +   +D    IV +S GP Y VG  S VDK++L  G  +++    L+++  L  EVDP+V  M  E     SY+ +GGL  QI+E++E++ELPL +PEL+  +GI+PPKGV+LYG PGTGKTL + ++A++  A FL+VV S +I KY
Sbjct:   82 MEEEFVAAQERLRPTEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKY 267          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.608e-33
Identity = 79/202 (39.11%), Postives = 116/202 (57.43%), Query Frame = 2
Query:  107 KKLLQHKEIESRVRSVKE----NLRAAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            K  LQH +   R++  K      L A + E N       ++L+ LQ  G  +GEV++ +   +++VK     +YVV     +D  KLT  TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +PELF  +GI  PKGVLLYGPPGTGKTL + ++A + D  F++V  S ++ KY
Sbjct:   34 KYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 235          
The following BLAST results are available for this feature:
BLAST of FC923324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PSMR_METJA8.965e-3436.56Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PRS4B_ARATH8.965e-3440.1026S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4A_ARATH8.965e-3440.1026S proteasome regulatory subunit 4 homolog A OS=A... [more]
PSMR_AERPE1.171e-3339.78Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS6B_ASPNG1.171e-3337.4426S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS8_MANSE1.529e-3337.9526S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS6B_SCHPO1.529e-3339.1126S protease regulatory subunit 6B homolog OS=Schi... [more]
PRS6B_MANSE1.997e-3334.3026S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS4_ORYSJ1.997e-3339.2526S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS8B_ARATH2.608e-3339.1126S protease regulatory subunit 8 homolog B OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC31703G03EF StrClemenN Citrus clementina cDNA clone C31703G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923324 ID=FC923324; Name=FC923324; organism=Citrus clementina; type=EST; length=688bp
GAAGCTTACGAGACTCGATTGATTTGCTACATCAATATCTCCGACTGCAA
CGATGAGCGAAGGAGAAGACGCCGTTAGACGCCGTAATGCCATGACGGAG
TACCGTAAGAAGCTACTCCAGCACAAAGAAATCGAATCTAGAGTTCGATC
TGTTAAGGAGAATTTGAGAGCTGCAAAGAAGGAGTTCAACAAAACAGAAG
ATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGAGAAGTTCTC
AGACCTCTTGACAATGAACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCG
TTATGTGGTTGGATGCCGCAGCAAAGTGGATAAAGAGAAGTTGACTTCGG
GAACAAGAGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTT
CCTCGTGAAGTTGATCCGGTTGTATATAACATGTTGCATGAGGATCCGGG
TAATGTTAGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAAT
TAAGGGAATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGA
GTTGGAATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAAC
TGGCAAGACATTATTNAGCACGAGCATTGCCAGTAACATAGATGCAAATT
TTCTGAAGGTGGTTTCAAGTGCCATTATTGATAAGTAC
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