FC923324

Overview
NameFC923324
Unique NameFC923324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.208e-32
Identity = 72/164 (43.90%), Postives = 105/164 (64.02%), Query Frame = 2
Query:  197 EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            E  ++ L+     +G +   +D+   IV ++ GP + V   S VDK KL  G  V+L+  TL+++  +  EVDP+V  M  E     SYS +GGL  Q++E++E+IELPL +PEL+  +GIKPPKGV+LYG PGTGKTL + ++A+   A FL+VV S +I KY
Sbjct:   95 EKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 258          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 77/218 (35.32%), Postives = 128/218 (58.72%), Query Frame = 2
Query:   38 SPTATMSEGEDAVRRRNAMTEYRKKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            S T   S+GED +  R       K L +  E IE +   VK+ L+  ++E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V   S +++E L     V LD  +  ++  LP E D  +  +   +  +V+Y+ +GG   Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+ + ++A +  A F++VV S  + KY
Sbjct:   23 SITDVPSDGEDDLYAR------LKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKY 234          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 70/195 (35.90%), Postives = 119/195 (61.03%), Query Frame = 2
Query:  125 KEIESRVRSVKENLRAAKKEFNKT-------EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +E E ++RS  EN+R  + + N         +D+L+ LQ  G  +GEV++ + +++++VK     +Y+V     ++ + L +  RV L   +  + + L  + DP+V  M+ E   + +Y  VGGL+ QI+E++E IELP+ +PELF  +GI  PKGV+LYGPPGTGKTL + ++A + D  F++V  + ++ KY
Sbjct:   28 QETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 71/195 (36.41%), Postives = 117/195 (60.00%), Query Frame = 2
Query:  125 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            ++++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE F  +GI  PKGVLLYGPPGTGKTL + ++A + D  F++V  S ++ K+
Sbjct:   24 EDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKF 218          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 70/195 (35.90%), Postives = 117/195 (60.00%), Query Frame = 2
Query:  107 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+ + ++A +  A F++VV S  + KY
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKY 239          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 70/195 (35.90%), Postives = 117/195 (60.00%), Query Frame = 2
Query:  107 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+ + ++A +  A F++VV S  + KY
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKY 239          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 70/195 (35.90%), Postives = 117/195 (60.00%), Query Frame = 2
Query:  107 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+ + ++A +  A F++VV S  + KY
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKY 239          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 70/195 (35.90%), Postives = 117/195 (60.00%), Query Frame = 2
Query:  107 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+ + ++A +  A F++VV S  + KY
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKY 239          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.096e-31
Identity = 70/199 (35.18%), Postives = 120/199 (60.30%), Query Frame = 2
Query:   92 MTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +T   ++L   + +E  ++    NL   +KE    ++++K +QSV  +IG+ L  +D    IV +++G  Y V   S +D+E L  G  V L   +  ++  LP E D  +  +  ++  ++SY  +GGL  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+ + ++A+N  A+F++VV S  + KY
Sbjct:   40 LTTLERQLAHLQVMEDYIKLETRNL---EKELLHAQEEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKY 235          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.431e-31
Identity = 81/229 (35.37%), Postives = 127/229 (55.46%), Query Frame = 2
Query:   29 TSISPTATMSEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKENLR---AAKKEFNKTEDD---LKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            T +      ++G DA  +   +T +   R KLL+ + I+  +    E +R     K +  K E++   +  L+     +G +   +D+   IV  S G  + V   S VDK++L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL  QI+E++ES+ELPL +PE +  +GIKPPKGV+LYGPPGTGKTL + ++A+   A FL+VV S +I KY
Sbjct:   30 TRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 258          
The following BLAST results are available for this feature:
BLAST of FC923324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PRS4_DICDI2.208e-3243.9026S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS6B_SOLTU2.884e-3235.3226S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS8_YEAST4.919e-3235.9026S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_XENLA4.919e-3236.4126S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS6B_RAT8.391e-3235.9026S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA8.391e-3235.9026S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN8.391e-3235.9026S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN8.391e-3235.9026S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_CAEEL1.096e-3135.18Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS4_DROME1.431e-3135.3726S protease regulatory subunit 4 OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionC31703G03EF StrClemenN Citrus clementina cDNA clone C31703G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923324 ID=FC923324; Name=FC923324; organism=Citrus clementina; type=EST; length=688bp
GAAGCTTACGAGACTCGATTGATTTGCTACATCAATATCTCCGACTGCAA
CGATGAGCGAAGGAGAAGACGCCGTTAGACGCCGTAATGCCATGACGGAG
TACCGTAAGAAGCTACTCCAGCACAAAGAAATCGAATCTAGAGTTCGATC
TGTTAAGGAGAATTTGAGAGCTGCAAAGAAGGAGTTCAACAAAACAGAAG
ATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGAGAAGTTCTC
AGACCTCTTGACAATGAACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCG
TTATGTGGTTGGATGCCGCAGCAAAGTGGATAAAGAGAAGTTGACTTCGG
GAACAAGAGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTT
CCTCGTGAAGTTGATCCGGTTGTATATAACATGTTGCATGAGGATCCGGG
TAATGTTAGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAAT
TAAGGGAATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGA
GTTGGAATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAAC
TGGCAAGACATTATTNAGCACGAGCATTGCCAGTAACATAGATGCAAATT
TTCTGAAGGTGGTTTCAAGTGCCATTATTGATAAGTAC
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