FC923324

Overview
NameFC923324
Unique NameFC923324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 68/179 (37.99%), Postives = 112/179 (62.57%), Query Frame = 2
Query:  152 VKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            +K+  R  K+E  + ++++K +QSV  +IG+ L P+D    IV +++G  YVV   S +D+E L     V L   +  ++  LP + D  +  M   +  +V+Y+ VGGL  Q +E+RE++ELPL+  +L+ ++GI PP+GVLLYGPPGTGKT+   ++A++  A F++V  S  + KY
Sbjct:   68 IKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY 246          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 72/208 (34.62%), Postives = 121/208 (58.17%), Query Frame = 2
Query:   86 NAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            N +  Y +K+   ++ E  +    +NLR  + + N          ++++ LQ  G  +GEV++ +   +++VK     +YVV     +D +++    RV L   +  +++ LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PELF  +GI  PKG+LLYGPPGTGKTL + ++A + D  F++V  S ++ KY
Sbjct:   15 NIVQYYTQKI---QDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQKY 219          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 69/195 (35.38%), Postives = 116/195 (59.49%), Query Frame = 2
Query:  107 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP   D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + EL+ ++GI PP+GVL+YGPPG GKT+ + ++A +  A F++VV S  + KY
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKY 239          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 80/229 (34.93%), Postives = 129/229 (56.33%), Query Frame = 2
Query:   29 TSISPTATMSEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKENLRAAK--KEFNKTEDDLKS----LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            T +      ++G DA  +   +T +   R KLL+ + I+  +   +E +R  +  K   + +++ +S    L+     +G +   +D+   IV  S G  + V   S VDK+ L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKPPKGV+LYGPPGTGKTL + ++A+   A FL+VV S +I KY
Sbjct:   31 TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 80/229 (34.93%), Postives = 129/229 (56.33%), Query Frame = 2
Query:   29 TSISPTATMSEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKENLRAAK--KEFNKTEDDLKS----LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            T +      ++G DA  +   +T +   R KLL+ + I+  +   +E +R  +  K   + +++ +S    L+     +G +   +D+   IV  S G  + V   S VDK+ L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKPPKGV+LYGPPGTGKTL + ++A+   A FL+VV S +I KY
Sbjct:   31 TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 80/229 (34.93%), Postives = 129/229 (56.33%), Query Frame = 2
Query:   29 TSISPTATMSEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKENLRAAK--KEFNKTEDDLKS----LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            T +      ++G DA  +   +T +   R KLL+ + I+  +   +E +R  +  K   + +++ +S    L+     +G +   +D+   IV  S G  + V   S VDK+ L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKPPKGV+LYGPPGTGKTL + ++A+   A FL+VV S +I KY
Sbjct:   31 TRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 80/229 (34.93%), Postives = 129/229 (56.33%), Query Frame = 2
Query:   29 TSISPTATMSEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKENLRAAK--KEFNKTEDDLKS----LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            T +      ++G DA  +   +T +   R KLL+ + I+  +   +E +R  +  K   + +++ +S    L+     +G +   +D+   IV  S G  + V   S VDK+ L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE +  +GIKPPKGV+LYGPPGTGKTL + ++A+   A FL+VV S +I KY
Sbjct:   31 TRVGKKKKKTKGPDAASKPPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 78/220 (35.45%), Postives = 126/220 (57.27%), Query Frame = 2
Query:   56 SEGEDAVRRRNAMTEY---RKKLLQHKEIESRVRSVKE---NLRAAKKEFNKTEDD---LKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            S+G DA  +  A+T +   R KLL+ + I+  +   +E   N    K +  + E++   +  L+     +G +   +D++  IV  + G  + V   S VDKE+L  G  V+L+     ++  L  + DP+V  M  E     +Y+ VGGL  QI+E++E++ELPL +PE +  +GI+PPKGV+LYG PGTGKTL + ++A+   A FL++V S +I KY
Sbjct:   43 SKGPDAASKLPAVTPHARCRLKLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATFLRIVGSELIQKY 262          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30
Identity = 65/179 (36.31%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  152 VKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            VK+  +  K+E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V   S +++E L     V L   +  ++  LP E D  +  +   +  +VSY+ +GG   Q +E+RE++ELPL + EL+ ++GI PP+GVLLYGPPGTGKT+ + ++A++  A F++VV S  + KY
Sbjct:   51 VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.067e-30
Identity = 74/204 (36.27%), Postives = 121/204 (59.31%), Query Frame = 2
Query:   95 TEYRKKLLQHKEIESRVRSVKE---NLRAAKKEFNKTEDD---LKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            T  R +LL+ + I   +   +E   N    K +  +T+++   +  ++     +G +   +D++  IV +++GP Y V   S VDK+ L  G  V+L    ++I+  L  + DP++  M  +     SY+ +GGL  QI+E++E++ELPL +PEL+  +GIKPPKGV+LYG PGTGKTL + ++A+   A FL+VV S +I KY
Sbjct:   63 TRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIV-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 265          
The following BLAST results are available for this feature:
BLAST of FC923324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PRS6B_YEAST1.869e-3137.9926S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS8_SCHPO2.441e-3134.6226S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS6B_MOUSE4.164e-3135.3826S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS4_RAT7.103e-3134.9326S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE7.103e-3134.9326S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN7.103e-3134.9326S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CHICK7.103e-3134.9326S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4_CAEEL7.103e-3135.45Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS6B_ARATH1.582e-3036.3126S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS4_SCHPO2.067e-3036.2726S protease regulatory subunit 4 homolog OS=Schiz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31703G03EF StrClemenN Citrus clementina cDNA clone C31703G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923324 ID=FC923324; Name=FC923324; organism=Citrus clementina; type=EST; length=688bp
GAAGCTTACGAGACTCGATTGATTTGCTACATCAATATCTCCGACTGCAA
CGATGAGCGAAGGAGAAGACGCCGTTAGACGCCGTAATGCCATGACGGAG
TACCGTAAGAAGCTACTCCAGCACAAAGAAATCGAATCTAGAGTTCGATC
TGTTAAGGAGAATTTGAGAGCTGCAAAGAAGGAGTTCAACAAAACAGAAG
ATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGAGAAGTTCTC
AGACCTCTTGACAATGAACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCG
TTATGTGGTTGGATGCCGCAGCAAAGTGGATAAAGAGAAGTTGACTTCGG
GAACAAGAGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTT
CCTCGTGAAGTTGATCCGGTTGTATATAACATGTTGCATGAGGATCCGGG
TAATGTTAGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAAT
TAAGGGAATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGA
GTTGGAATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAAC
TGGCAAGACATTATTNAGCACGAGCATTGCCAGTAACATAGATGCAAATT
TTCTGAAGGTGGTTTCAAGTGCCATTATTGATAAGTAC
back to top