FC923324

Overview
NameFC923324
Unique NameFC923324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 70/196 (35.71%), Postives = 115/196 (58.67%), Query Frame = 2
Query:  116 LQHKEIE----SRVRSVKENLRAA-KKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            L H E++    +++  V E  RA   +      +++  +Q     +G V+  +   +++VK +   +Y+V     V+ ++L +G RV L   +  + R LP +VDP+V  M+ E   + +Y  +GGL +QI+E+RE IELP+ +PELF  +GI  PKGVLLYGPPGTGKTL + ++A +    F++V  S ++ KY
Sbjct:   75 LDHLEVQIAKKTKILRVLEQKRAELNRRVRFLREEISIVQEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGIAQPKGVLLYGPPGTGKTLLARAVAHHTQCKFIRVSGSELVQKY 270          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 72/194 (37.11%), Postives = 116/194 (59.79%), Query Frame = 2
Query:  107 KKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            KKL     +E  + S+ E  ++++   N  +  ++ L+     +G +   +D+   I+    G  Y V   S VDK+ L  G  V+L+    +++  L  E+DP+V  M  E   + +Y+ +GGL +QI+E++ES+ELPL NPEL+  +GIKPPKGV+LYG PGTGKTL + ++A+   A FL+VV + +I +Y
Sbjct:   51 KKLAHLLSLEDNILSLCEPDKSSEGS-NSQKHVVEQLRGSPLSVGTLEEFVDDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNYKDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKAVANQTSATFLRVVGTELIQEY 243          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.285e-29
Identity = 72/217 (33.18%), Postives = 126/217 (58.06%), Query Frame = 2
Query:   44 TATMSEGEDAVRRRNAMTEYRKKLLQHKEIESRVRS--VKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            TA ++  ++A   R A    + K L+ K     ++   +K   +  K+E    ++++K ++SV  +IG++L  +D+   IV+++SG    V   S +D+E L     V L   +  ++  LP E D  ++ +  ++  + SYS +GG   Q +E+RE++ELPL +  L+ ++GI PP+GVLLYGPPGTGKT+ + ++A +  A F++VV S  + KY
Sbjct:    8 TAKVTVTKEASHHREADLYQKMKSLESKLDFFNIQEEYIKYEYKNLKRELLHAQEEVKRIRSVPLLIGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTSAAFIRVVGSEFVQKY 224          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 61/143 (42.66%), Postives = 91/143 (63.64%), Query Frame = 2
Query:  260 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            ++ + ++      ++VVG   +V    +  G RV +D +   I   LP  +DP V  M  E+  +V+YS VGG  DQI +LRE +ELPL++PE F  +GI PPKG+LLYGPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:  141 EDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 283          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.134e-28
Identity = 59/143 (41.26%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  260 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            D+ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +V+Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:  100 DDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 58/143 (40.56%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  260 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +V+Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:  100 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 58/143 (40.56%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  260 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +V+Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:   99 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 241          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 78/229 (34.06%), Postives = 120/229 (52.40%), Query Frame = 2
Query:   53 MSEGEDAVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLR----------------AAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            + EG+ AV +R     Y ++L     +IE+ ++ V E                   AA K+  + E  L+  +    I  +   P    R ++      ++VV     V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  DQI +LRE +E PL++PE ++ +GI+PPKGVLLYGPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:   27 LDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKKVNELSGVKESDTGLAPPALWDIAADKQAMQQEQPLQVARCTKIITSDKHDP----RYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIEPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 251          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 58/143 (40.56%), Postives = 92/143 (64.34%), Query Frame = 2
Query:  260 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +V+Y+ VGG  +QI ++RE +ELP+++PE F+++GI PPKGVL YGPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:  100 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKY 242          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 72/229 (31.44%), Postives = 123/229 (53.71%), Query Frame = 2
Query:   41 PTATMSEGEDAVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTED-------DLKSLQS-----VGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            P   + EG+ A+ +    + Y +++ Q   +I+  ++ + E     + +             D ++LQS     V +    +    ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:   21 PIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIITADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 249          
The following BLAST results are available for this feature:
BLAST of FC923324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PRS8_ENCCU4.604e-3035.7126S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS4_ENCCU1.750e-2937.1126S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS6B_DICDI2.285e-2933.1826S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS7_YEAST2.984e-2942.6626S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS7_ORYSJ1.134e-2841.2626S protease regulatory subunit 7 OS=Oryza sativa ... [more]
PRS7_SPIOL3.300e-2840.5626S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_PRUPE3.300e-2840.5626S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7_CAEEL3.300e-2834.0626S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7A_ARATH3.300e-2840.5626S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS7_PONAB4.309e-2831.4426S protease regulatory subunit 7 OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionC31703G03EF StrClemenN Citrus clementina cDNA clone C31703G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923324 ID=FC923324; Name=FC923324; organism=Citrus clementina; type=EST; length=688bp
GAAGCTTACGAGACTCGATTGATTTGCTACATCAATATCTCCGACTGCAA
CGATGAGCGAAGGAGAAGACGCCGTTAGACGCCGTAATGCCATGACGGAG
TACCGTAAGAAGCTACTCCAGCACAAAGAAATCGAATCTAGAGTTCGATC
TGTTAAGGAGAATTTGAGAGCTGCAAAGAAGGAGTTCAACAAAACAGAAG
ATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGAGAAGTTCTC
AGACCTCTTGACAATGAACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCG
TTATGTGGTTGGATGCCGCAGCAAAGTGGATAAAGAGAAGTTGACTTCGG
GAACAAGAGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTT
CCTCGTGAAGTTGATCCGGTTGTATATAACATGTTGCATGAGGATCCGGG
TAATGTTAGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAAT
TAAGGGAATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGA
GTTGGAATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAAC
TGGCAAGACATTATTNAGCACGAGCATTGCCAGTAACATAGATGCAAATT
TTCTGAAGGTGGTTTCAAGTGCCATTATTGATAAGTAC
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