FC923324

Overview
NameFC923324
Unique NameFC923324
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 72/229 (31.44%), Postives = 124/229 (54.15%), Query Frame = 2
Query:   41 PTATMSEGEDAVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTED-------DLKSLQS-----VGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            P  ++ EG+ A+ +    + Y +++ Q   +I+  ++ + E     + +             D ++LQS     V +    +    ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:   21 PIRSLDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 249          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 124.02 bits (310), Expect = 7.351e-28
Identity = 72/229 (31.44%), Postives = 123/229 (53.71%), Query Frame = 2
Query:   41 PTATMSEGEDAVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTED-------DLKSLQS-----VGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            P   + EG+ A+ +    + Y +++ Q   +I+  ++ + E     + +             D ++LQS     V +    +    ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:   21 PIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 249          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 7.351e-28
Identity = 72/229 (31.44%), Postives = 123/229 (53.71%), Query Frame = 2
Query:   41 PTATMSEGEDAVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTED-------DLKSLQS-----VGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            P   + EG+ A+ +    + Y +++ Q   +I+  ++ + E     + +             D ++LQS     V +    +    ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:   21 PIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 249          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 7.351e-28
Identity = 72/229 (31.44%), Postives = 123/229 (53.71%), Query Frame = 2
Query:   41 PTATMSEGEDAVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTED-------DLKSLQS-----VGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            P   + EG+ A+ +    + Y +++ Q   +I+  ++ + E     + +             D ++LQS     V +    +    ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:   21 PIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 249          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 7.351e-28
Identity = 72/229 (31.44%), Postives = 123/229 (53.71%), Query Frame = 2
Query:   41 PTATMSEGEDAVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTED-------DLKSLQS-----VGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            P   + EG+ A+ +    + Y +++ Q   +I+  ++ + E     + +             D ++LQS     V +    +    ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:   21 PIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY 249          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 72/229 (31.44%), Postives = 122/229 (53.28%), Query Frame = 2
Query:   41 PTATMSEGEDAVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTED-------DLKSLQS-----VGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            P   + EG+ A+ +    + Y +++ Q   +I+  ++ + E     + +             D ++LQS     V +    +    ++ + I+      ++VV    +V    +  G RV +D     I   LP ++DP V  M  E+  +V+YS VGG  +QI +LRE +E PL++PE F+ +GI+PPKGVLL+GPPGTGKTL + ++A+  DA F+ V+ S ++ KY
Sbjct:   21 PIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIPVIGSELVQKY 249          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 57/130 (43.85%), Postives = 84/130 (64.62%), Query Frame = 2
Query:  299 RYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            ++VV    +V    +  G RV  D     I   LP ++DP V  M  E+  +V+Y  VGG  +QI  LRE +ELPL++PE F+++GI PPKG++LYGPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:  124 KFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY 253          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.765e-27
Identity = 58/143 (40.56%), Postives = 90/143 (62.94%), Query Frame = 2
Query:  260 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            ++ + +V      +YVVG   K     + +G RV +D     I   LP ++DP V  M  E+  + +YS +GG  +QI ++RE +ELP+++PE F+R+GI PPKGVL YGPPG+GKTL + ++A+   A F++VV S ++ KY
Sbjct:  137 EDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKY 279          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.811e-26
Identity = 57/142 (40.14%), Postives = 88/142 (61.97%), Query Frame = 2
Query:  263 NERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            N + I+      ++VV    K+    +  G RV +D     I   LP ++D  V  M  E+  +++Y  VGG  +QI +LRE +E+PL++PE F+ +GI PPKGVL+YGPPGTGKTL + ++A+  DA F++V+ S ++ KY
Sbjct:  103 NAKYIITVKQIAKFVVALGDKLSPTDVEEGIRVGVDRNKYQIQIPLPPKIDASVTMMQVEEKPDITYKDVGGCKEQIEKLREVVEMPLLHPEKFVNLGIDPPKGVLMYGPPGTGKTLCARAVANRTDAAFVRVIGSELVQKY 244          
BLAST of FC923324 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.533e-25
Identity = 64/217 (29.49%), Postives = 124/217 (57.14%), Query Frame = 2
Query:   41 PTATMSEGEDAVRRRNAMTEYRKKLLQ-HKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLXSTSIASNIDANFLKVVSSAIIDKY 688
            PT  +        R NA+ ++   ++  + E+++++  V+      ++E N+ + + ++L++    +  V    ++   ++K     + V+   S    + L  G RV ++  + ++ R L  E D     M  ++  +V+Y+ +GGL DQ+RE+RE++E PL+NPE F  VG++PP GVLL+GPPGTGKT+ + ++A+  DA+F+K+  S ++ K+
Sbjct:   11 PTLDVDPESTPAERLNALQDHYVDIVAVNGELQAQLDDVEARREELREEVNRLQRENETLKTASLYLATVEDLPEDGSAVIKQHGNNQEVLTELSPRLADTLEVGDRVAIN-DSFSVQRVLDDETDARAQAMEVDESPSVTYADIGGLDDQLREVREAVEDPLVNPEKFDAVGVEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKF 226          
The following BLAST results are available for this feature:
BLAST of FC923324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
PRS7_XENLA5.628e-2831.4426S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_MOUSE7.351e-2831.4426S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA7.351e-2831.4426S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN7.351e-2831.4426S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN7.351e-2831.4426S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS7_RAT1.638e-2731.4426S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_SCHPO2.139e-2743.8526S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS7B_ARATH4.765e-2740.5626S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS7_DICDI1.811e-2640.1426S protease regulatory subunit 7 OS=Dictyostelium... [more]
PSMR1_HALSA1.533e-2529.49Proteasome-activating nucleotidase 1 OS=Halobacter... [more]

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Properties
Property NameValue
Genbank descriptionC31703G03EF StrClemenN Citrus clementina cDNA clone C31703G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923324 ID=FC923324; Name=FC923324; organism=Citrus clementina; type=EST; length=688bp
GAAGCTTACGAGACTCGATTGATTTGCTACATCAATATCTCCGACTGCAA
CGATGAGCGAAGGAGAAGACGCCGTTAGACGCCGTAATGCCATGACGGAG
TACCGTAAGAAGCTACTCCAGCACAAAGAAATCGAATCTAGAGTTCGATC
TGTTAAGGAGAATTTGAGAGCTGCAAAGAAGGAGTTCAACAAAACAGAAG
ATGATTTGAAGTCTCTTCAAAGTGTTGGGCAGATCATTGGAGAAGTTCTC
AGACCTCTTGACAATGAACGCTTGATTGTTAAAGCTAGCAGCGGGCCCCG
TTATGTGGTTGGATGCCGCAGCAAAGTGGATAAAGAGAAGTTGACTTCGG
GAACAAGAGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTT
CCTCGTGAAGTTGATCCGGTTGTATATAACATGTTGCATGAGGATCCGGG
TAATGTTAGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAAT
TAAGGGAATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGA
GTTGGAATTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAAC
TGGCAAGACATTATTNAGCACGAGCATTGCCAGTAACATAGATGCAAATT
TTCTGAAGGTGGTTTCAAGTGCCATTATTGATAAGTAC
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