FC923334

Overview
NameFC923334
Unique NameFC923334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923334 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 49/146 (33.56%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  264 IWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANPDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKDSAEVKDGVLYITIPR 698
            I D F   R++ QM+  M+++ E P        + +    SG RRG   W ++E ++   +R+D+PG+SR DVK+ +E++ LVI+ E          G T  EE E  S     +++RI LP+ V + ++  AE+K+GVL + IP+
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV-----SATRGMGASGVRRG---WNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGE----------GET--EEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPK 195          
BLAST of FC923334 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 47/160 (29.38%), Postives = 84/160 (52.50%), Query Frame = 3
Query:  222 SQPKKRAAPVSSPGIWDSFPAARTVQQMMETMERIMEDPFAYGVTWPSQQERVRSGYRRGRTPWAIRETENDYKIRLDVPGMSRNDVKVRVEESMLVIKAEKAQRNEANPDGSTVEEEEEWPSNGYGSYSTRIALPDNV-EFEKDSAEVKDGVLYITIPR 698
            S P+ R   +    ++D F   R++ Q++  ++ + ++P             + +  RRG   W  RETE+   +RLD+PG+ + DVK+ VE++ L IK E+             +E EE   +G   +S+RI LP+ + + +   AE+K+GVL +T+P+
Sbjct:   55 SFPRTRRDDLLLSDVFDPFSPPRSLSQVLNMVDLLTDNPV------------LSAASRRG---WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEG-----------AKESEEKEKSG-RRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPK 187          
The following BLAST results are available for this feature:
BLAST of FC923334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HS235_ARATH2.626e-1233.5623.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA1.303e-1129.38Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]

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Properties
Property NameValue
Genbank descriptionC31703H09EF StrClemenN Citrus clementina cDNA clone C31703H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923334 ID=FC923334; Name=FC923334; organism=Citrus clementina; type=EST; length=701bp
GGCTTCTCAGTATTGGTGACATCTCTCAATCAAAAACTATATCTTAGAAA
ATGGCATCTCATCTTGGTATCTGTACTCCCTGTGCGTCCGAAATAATCAC
CGGTTTTCCCAGCTACAGGTCTCCACCTTTGTTGAGAAATAGAGACTTTT
GTGGCAGGATAAAGGCCGTGGCAGATAACAGAGGCAGCCTTGATCACTTG
CAAAGATCGTCGCTGAATCAATCCCAGCCAAAAAAGAGAGCGGCCCCAGT
TTCATCTCCAGGGATATGGGATAGTTTTCCTGCTGCGAGGACGGTGCAAC
AGATGATGGAAACCATGGAAAGAATAATGGAGGATCCTTTTGCTTACGGA
GTCACTTGGCCTTCACAACAAGAAAGGGTGAGAAGTGGATACAGACGGGG
AAGAACGCCTTGGGCCATCAGGGAAACGGAAAACGACTACAAGATTAGGT
TAGACGTGCCTGGCATGAGCAGGAATGATGTTAAGGTACGGGTTGAAGAG
AGCATGCTCGTAATCAAGGCAGAAAAGGCTCAAAGGAACGAAGCAAACCC
TGATGGAAGTACAGTTGAGGAAGAAGAAGAGTGGCCAAGCAATGGTTACG
GAAGCTACAGCACTAGAATTGCATTGCCTGACAACGTAGAGTTTGAGAAA
GATTCAGCAGAGGTGAAAGATGGCGTACTGTATATAACCATTCCAAGGCC
A
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