FC923346

Overview
NameFC923346
Unique NameFC923346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP2_ANADE (Prolyl-tRNA synthetase 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=proS2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 79/216 (36.57%), Postives = 116/216 (53.70%), Query Frame = 3
Query:    3 EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTA-----TVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDN--GAKVDLPRSSLVERIKELLDEIQESL 629
            EE++A+PV++G+K+E E+F G + T  +EA + +  + +Q  TSH LGQNF+K   I F++EKG    AW  SW  +TR IG M+M HGDD G+V                 K    + +   CTA       +T   A +  ++D+RD      K   W  KG P+R+E+GP+D+ K  V   R D     K  +PR+ LV  +  LL EIQ++L
Sbjct:  201 EEWMALPVVQGEKTESERFPGAVRTYCIEAMMQDR-KALQAGTSHFLGQNFAKASGIQFQDEKGTLTHAWTTSWGLSTRMIGAMIMTHGDDDGMVCPPRLAPQQVVIIPVIQKPEVREQVLAWCTALKRELEAQTYAGAPVRVHLDARD-LQGAKKSWEWIKKGTPVRLEVGPRDIEKGAVFMGRRDRKPREKQSVPRAELVAGVGALLQEIQDAL 414          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_PYRAE (Prolyl-tRNA synthetase OS=Pyrobaculum aerophilum GN=proS PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.951e-31
Identity = 69/198 (34.85%), Postives = 108/198 (54.55%), Query Frame = 3
Query:   36 KKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESL 629
            K+ E +KFAG  YT   +  +P+ GR +Q  T H LG NF+K+FE+ + +  G + +A   S+  + R+I  M++ HGDD G  L               Y + +   +      T   L EAGI   +D R + +PGWK+ +WE+KGVPLR+EIG +D+ K Q    R D   K  +  + LV+ +K+L+  ++E+L
Sbjct:  203 KRPEWDKFAGAEYTIAFDTILPD-GRSLQIGTVHYLGTNFTKVFEVTYLDADGTRKLAHTTSYGISERSIAAMLITHGDDGGTTLPPKLAPIQVVVIPIYYGEEEAPLVMPLVRETANRLNEAGIRVYVDERADKTPGWKFYYWELKGVPLRVEIGKRDVEKRQAVIARRDTLEKYAVSINELVDAVKQLMKSVEENL 399          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_UNCMA (Prolyl-tRNA synthetase OS=Uncultured methanogenic archaeon RC-I GN=proS PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.038e-30
Identity = 80/206 (38.83%), Postives = 108/206 (52.43%), Query Frame = 3
Query:   12 LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESL 629
            LAVP I  K+ E +KF G  YT   +  +P+ G+ +Q  T H LG  F+K ++I +E+EKGE+    Q  +  + R I  ++ +HGD+KGLVL               +K  D  G+ +AC    E L    I A +D  D   PG KY  WEMKG P RIEIGP+D+  N V  VR D G K  +P   L E ++  L E Q  L
Sbjct:  191 LAVPFIVHKRPEWDKFPGADYTMAFDTMMPD-GKSLQVGTVHHLGTKFAKTYDITYEDEKGERQYVNQTCYGISERCIAAVIGIHGDNKGLVLPPNASQTQVVIIPIIFK-KDDGGVKEACQKVKELLRANDIVAVIDDADE-RPGAKYYKWEMKGTPFRIEIGPRDIKNNSVMLVRRD-GKKESIPMDGLPETVRNKLFEFQTDL 392          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP2_RHOSR (Prolyl-tRNA synthetase 2 OS=Rhodococcus sp. (strain RHA1) GN=proS2 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 75/209 (35.89%), Postives = 112/209 (53.59%), Query Frame = 3
Query:    6 EFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAV-RCDNGAKVDLPRSSLVERIKELLDEIQESL 629
            E  A+PV+ G+K+  E+FAG + T T+E  + + GR +Q  TSH +G  F+  F+I F +E G + +    SW  +TR IG +VM HGDDKGLV                        +  A       L   G+  ++D+R + +PG+KY+ WEM+GVP+R+E+GP+DL    V  V R  +  K  +P  SL E +  +LD+ Q  L
Sbjct:  189 ELAAIPVVPGEKTPGERFAGAVATYTIEGMMRD-GRALQSGTSHYMGIKFASAFDIRFTSETGREELCHTTSWGMSTRMIGGIVMTHGDDKGLVF--PPRLAPHQVVIVPITRGGNVAVEGAADELAHRLRSVGVRTHVDARPHLTPGFKYNEWEMRGVPVRLELGPRDLEDGTVMMVKRLGDDGKQAVPIDSLPEAMPGVLDDFQAFL 394          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_IGNH4 (Prolyl-tRNA synthetase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=proS PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.313e-30
Identity = 72/207 (34.78%), Postives = 111/207 (53.62%), Query Frame = 3
Query:   12 LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQ-GIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESL 629
            L +P +  ++   +KFAG LYT   +  +P+ GR +Q  T H LGQNFS  FE+ F  E G+K   WQ S+  + R I  +V VHGD++GLVL                K+ + Q  + +      E L   G    +D RD  +PG KY  WE+KGVP RIEIG K++  +++   R D   +V + +  + +R+KE+ D++  ++
Sbjct:  188 LGIPYMISQRPPWDKFAGALYTVAFDTVMPD-GRVLQIGTVHHLGQNFSVPFEVRFHTEDGDKDYVWQTSYGLSDRVIASLVAVHGDERGLVLPPEVAPVQVVIVPIPQKEEEQQRKVLEEAKRVEEELKARGWRTVLDDRDELTPGAKYYEWELKGVPFRIEIGKKEVEGDELTVARRDLKKRVKVKKGEIHQRLKEMSDDMLNNM 393          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_PYRFU (Prolyl-tRNA synthetase OS=Pyrococcus furiosus GN=proS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 70/207 (33.82%), Postives = 113/207 (54.59%), Query Frame = 3
Query:   12 LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            LA+  +  K+ E +KF G  Y+   E  +P+ GR +Q  T H   QNF+K + I++E E G      Q ++  + R +  ++ +HGDD+G+VL                K ++ + ++       E L  AGI  ++D RD   PGWK+  WE+KGVP+RIE+GP+D A+  V   R D   K+ + R  LV++++EL D+I + L+
Sbjct:  189 LAIAYVISKRPEWDKFPGAYYSLGAEVVMPD-GRTLQIGTMHNYKQNFAKAYNILYEKEDGTHDYVHQTTFGMSERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPKKGSEEE-VYSYAREIEEELKLAGIRVHLDLRDK-RPGWKFYDWELKGVPVRIEVGPRDAAEKTVVLARRDKLEKITVSREELVDKVRELFDDIMQYLY 392          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_ONYPE (Prolyl-tRNA synthetase OS=Onion yellows phytoplasma GN=proS PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 78/213 (36.62%), Postives = 118/213 (55.40%), Query Frame = 3
Query:    3 EEFLAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETL---CEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            +  LA+P + GKK+E EKFAG L T ++EA + + G+ +Q  TSH LG NF+K F+I F++   +K    Q SW  +TR IG ++MVH DD+GLVL                +D       DA   T E L    +     ++D +D  + GWK+S +E+KGVPLRIEIG + L  ++V   +  N AK ++    L  +I +L + I  +++
Sbjct:  190 KNLLALPFVCGKKTETEKFAGALITYSIEALM-HDGQALQAGTSHYLGTNFAKSFQIQFQDCDHQKKYVHQTSWGVSTRLIGALIMVHSDDEGLVLPPYVSPMQIVIIPLQPQD-------DAVKQTSENLFSILQKNYRVHLDLQDK-TAGWKFSQYELKGVPLRIEIGKRGLENDEVTIFQRYNFAKQNIKTKDLPSQIPQLFETIHNNMY 393          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_PYRCJ (Prolyl-tRNA synthetase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=proS PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.946e-30
Identity = 65/198 (32.83%), Postives = 109/198 (55.05%), Query Frame = 3
Query:   36 KKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESL 629
            ++ + +KFAG +YT   +  +P+ GR +Q  T H LG  F+++FE+ +    G + +A   S+  + R+I  M++ HGDD G V+               Y + +   +  A     + L EAG   ++D RD+ +PGWK+ +WE++GVPLR+E+G +D+   QV   R D  AK  +    LV+ +K LL E++ +L
Sbjct:  203 RRPDWDKFAGAVYTIAFDTVLPD-GRALQIGTVHYLGTKFTEVFEVTYLAPDGSRRLAHTTSYGISERSIAAMLITHGDDAGTVIPPKLAPIQVVVVPIFYGEEEKGVVMPAAEQAAKALREAGFRVHVDGRDDKTPGWKFYYWELRGVPLRVEVGKRDVEGRQVVVARRDTLAKYAVAVDELVDAVKALLSEVEANL 399          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_PYRHO (Prolyl-tRNA synthetase OS=Pyrococcus horikoshii GN=proS PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 70/207 (33.82%), Postives = 112/207 (54.11%), Query Frame = 3
Query:   12 LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            LA+  I  K+ E +KF G  Y+   E  +P+ GR +Q  T H   QNFSK + I++E E G      Q ++  + R +  ++ +HGDD+G+VL                K ++ + ++       E L +AGI   +D RD   PGWK+  WE+KGVP+R+E+GP D+  + V   R D   K+ + R  LV++++EL ++I E L+
Sbjct:  189 LALAYIISKRPEWDKFPGAFYSLGAEVVMPD-GRTLQIGTMHNYKQNFSKAYNILYEKEDGTHDYVHQTTFGMSERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPKKGSEEE-VYSYAKGIEEELRDAGIRVYLDLRDK-RPGWKFYDWELKGVPVRVEVGPIDVQNSTVVLARRDKLEKITVKREELVDKVRELFEDIMEFLY 392          
BLAST of FC923346 vs. ExPASy Swiss-Prot
Match: SYP_PYRAB (Prolyl-tRNA synthetase OS=Pyrococcus abyssi GN=proS PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.790e-30
Identity = 69/207 (33.33%), Postives = 113/207 (54.59%), Query Frame = 3
Query:   12 LAVPVIKGKKSELEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFSKMFEIIFENEKGEKAMAWQNSWAYTTRTIGVMVMVHGDDKGLVLXXXXXXXXXXXXXXXYKDADTQGIFDACTATVETLCEAGICANMDSRDNYSPGWKYSHWEMKGVPLRIEIGPKDLAKNQVRAVRCDNGAKVDLPRSSLVERIKELLDEIQESLF 632
            LA+  I  K+ E +KF G  Y+   E  +P+ GR +Q  T H   QNF+K + I++E E G      Q ++  + R +  ++ +HGDD+G+VL                K+   + +++      E L  AGI  ++D R+   PGWK+  WE+KGVP+RIE+GP+D+  + V   R D   K+ + R  LV++++EL D+I + L+
Sbjct:  189 LAIAYIISKRPEWDKFPGAFYSLGAEVVMPD-GRTLQIGTMHNYKQNFAKAYNILYEKEDGTHDYVHQTTFGMSERLLAAVIAIHGDDRGMVLPPTIAPIQVVIVPIPKKEKQ-EIVYEYAREIEEELRTAGIRVHLDMREK-RPGWKFYDWELKGVPVRIEVGPRDVENSTVVLARRDKLEKITIKREELVDKVRELFDDIMKYLY 392          
The following BLAST results are available for this feature:
BLAST of FC923346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
SYP2_ANADE6.088e-3136.57Prolyl-tRNA synthetase 2 OS=Anaeromyxobacter dehal... [more]
SYP_PYRAE7.951e-3134.85Prolyl-tRNA synthetase OS=Pyrobaculum aerophilum G... [more]
SYP_UNCMA1.038e-3038.83Prolyl-tRNA synthetase OS=Uncultured methanogenic ... [more]
SYP2_RHOSR1.356e-3035.89Prolyl-tRNA synthetase 2 OS=Rhodococcus sp. (strai... [more]
SYP_IGNH42.313e-3034.78Prolyl-tRNA synthetase OS=Ignicoccus hospitalis (s... [more]
SYP_PYRFU3.021e-3033.82Prolyl-tRNA synthetase OS=Pyrococcus furiosus GN=p... [more]
SYP_ONYPE3.021e-3036.62Prolyl-tRNA synthetase OS=Onion yellows phytoplasm... [more]
SYP_PYRCJ3.946e-3032.83Prolyl-tRNA synthetase OS=Pyrobaculum calidifontis... [more]
SYP_PYRHO8.790e-3033.82Prolyl-tRNA synthetase OS=Pyrococcus horikoshii GN... [more]
SYP_PYRAB8.790e-3033.33Prolyl-tRNA synthetase OS=Pyrococcus abyssi GN=pro... [more]

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Properties
Property NameValue
Genbank descriptionC31704A10EF StrClemenN Citrus clementina cDNA clone C31704A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923346 ID=FC923346; Name=FC923346; organism=Citrus clementina; type=EST; length=636bp
ATGAAGAATTCTTGGCTGTTCCTGTTATAAAGGGTAAGAAGAGTGAGCTA
GAAAAGTTTGCTGGTGGGCTTTACACAACGACCGTTGAGGCATTTATTCC
GAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGTTTGGGCCAAA
ACTTTTCAAAAATGTTTGAGATAATTTTTGAAAATGAGAAGGGAGAGAAG
GCTATGGCCTGGCAGAATTCTTGGGCCTACACTACCCGAACAATTGGGGT
TATGGTGATGGTCCATGGGGATGACAAAGGCTTGGTGCTGCCACCTAGAG
TTGCATCTGTGCAAGTGATTGTTGTTCCTGTGCCTTACAAAGATGCTGAT
ACTCAAGGAATTTTTGATGCCTGCACTGCAACTGTAGAAACATTGTGTGA
GGCAGGTATTTGTGCTAATATGGACTCAAGAGACAACTACTCACCTGGAT
GGAAGTACTCACACTGGGAAATGAAAGGTGTTCCCCTTAGGATTGAAATA
GGACCAAAAGACTTGGCAAAAAATCAGGTACGTGCTGTTCGCTGTGACAA
TGGAGCAAAAGTTGATCTGCCTAGGAGCTCTTTGGTTGAGCGAATAAAAG
AACTTCTTGATGAGATTCAAGAAAGCTTGTTTGTTG
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