FC923375

Overview
NameFC923375
Unique NameFC923375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_YEAST (F-actin-capping protein subunit beta OS=Saccharomyces cerevisiae GN=CAP2 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 7.377e-19
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 3 
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDE-ESGKEFILCEYNRDADSYRSPWSNKYHP-----PLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            D + +AA+ L+RR+ P   +                    VD PL    D  +S +E++ C+YNRD DS+RSPWSN Y+P      L+D+ +P A LRKLEI AN+ F +YRD YYEG
Sbjct:    3 DAQFDAALDLLRRLNPTTLQENLNNLIELQPNLAQDLLSSVDVPLSTQKDSADSNREYLCCDYNRDIDSFRSPWSNTYYPELSPKDLQDSPFPSAPLRKLEILANDSFDVYRDLYYEG 120
[Close]
BLAST of FC923375 vs. ExPASy Swiss-Prot
Match: CAPZB_KLULA (F-actin-capping protein subunit beta OS=Kluyveromyces lactis GN=CAP2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.018e-17
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 3 
Query:  126 DKKMEAAMGLMRRMPPKHSETXXXXXXXXXXXXXXXXXXQVDQPLQVLFDEESG-KEFILCEYNRDADSYRSPWSNKYHP-----PLEDALYPPAELRKLEIEANEVFAIYRDQYYEG 461
            D+K +AA  L+ R+ P   +T                   +D PL +  D ++  KEF+ C+YNRD DS+RSPWSN+Y P      L+++ +P   LR+LE+  N  F +YRD YYEG
Sbjct:    4 DEKYDAACELLYRLDPTKVKTHLQNLIALEPEIAEGLLSSIDIPLTIKKDTDANNKEFLCCDYNRDIDSHRSPWSNQYFPELSAEDLKESPFPSEPLRELEVACNNSFELYRDLYYEG 121
The following BLAST results are available for this feature:
BLAST of FC923375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
CAPZB_YEAST7.377e-1941.53F-actin-capping protein subunit beta OS=Saccharomy... [more]
CAPZB_KLULA9.018e-1738.14F-actin-capping protein subunit beta OS=Kluyveromy... [more]

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Properties
Property NameValue
Genbank descriptionC31704D03EF StrClemenN Citrus clementina cDNA clone C31704D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923375 ID=FC923375; Name=FC923375; organism=Citrus clementina; type=EST; length=463bp
GGGATCAAAACGAGAAGGGTGAGCGCCTCTTCTGGTCATTTTGTTTTGTT
GCTTTCCTGCGCTTGCTTTGTGTCGAATATACAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGATAAGAAAATGGAGGCAGCAATGG
GATTGATGAGAAGAATGCCGCCGAAGCACTCGGAAACAGCACTGTCTGCA
CTTCTCAGCCTCTTGCCTGATCACTCCTCCGATCTCCTCTCTCAAGTCGA
TCAGCCTCTCCAGGTTTTATTTGATGAGGAGAGCGGGAAAGAGTTCATTT
TGTGTGAATACAACAGAGATGCTGATTCTTATAGGTCTCCTTGGTCAAAT
AAGTACCATCCGCCATTGGAAGATGCACTGTACCCTCCTGCAGAGTTAAG
GAAGCTTGAAATTGAAGCGAATGAAGTGTTTGCAATTTATCGTGACCAGT
ATTATGAAGGTGG
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