FC923377

Overview
NameFC923377
Unique NameFC923377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.014e-20
Identity = 53/135 (39.26%), Postives = 66/135 (48.89%), Query Frame = 1
Query:  193 SVKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 597
            S  F L   PY   + +PH + +T E+H GKHH AYV NLN  +   E    K+LE+++  S ++   +  FNNAAQ WNH FFW                  I  DFGS              QFGSGWAWLVY
Sbjct:   11 SYPFVLPNLPYEKESFKPHFTAETFEYHHGKHHNAYVQNLNNLLKDKEELQKKNLEEIIDWS-SQNQNIAIFNNAAQVWNHTFFWHSIKPNGGGKPSGKILKQINEDFGSFEEFCEQFKAEATGQFGSGWAWLVY 144          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.729e-20
Identity = 54/131 (41.22%), Postives = 66/131 (50.38%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 594
            F+L   PY ++ALEPH+SK+TLEFH GKHH  YV  LN  I GT+  + KSLE++V +S         FNNAAQ WNH F+W                  I   +GS               FGS W WLV
Sbjct:    2 FELPSLPYAIDALEPHISKETLEFHHGKHHNTYVVKLNGLIPGTKF-ENKSLEEIVCSSDG-----GVFNNAAQIWNHTFYWNSLSPNGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLV 126          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.949e-20
Identity = 52/135 (38.52%), Postives = 65/135 (48.15%), Query Frame = 1
Query:  193 SVKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 597
            S  F L   PY   + +PH + +T ++H GKHH AYV NLN  +   E    K LE+++  S ++      FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWLVY
Sbjct:   11 SYPFILPDLPYDKESFKPHFTPETFDYHHGKHHNAYVQNLNNLLKDKEELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHSFFWHSIKPQGGGKPSGKILEQINKDFGSFEGFCEQFKQEAVGQFGSGWAWLVY 144          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.911e-19
Identity = 50/135 (37.04%), Postives = 64/135 (47.41%), Query Frame = 1
Query:  193 SVKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 597
            S  F L   PY   + +PH + +T ++H GKHH  YV NLN  +   E    K LE+++  S ++      FNNAAQ WNH FFW                  I +DFGS              QFGSGWAWL+Y
Sbjct:   11 SYPFILPDLPYEKESFKPHFTLETFDYHHGKHHNTYVQNLNNLLKDKEELQKKDLEEIIEWS-SQNSNAAIFNNAAQIWNHTFFWHSIKPQGGGKPSGKILEQINKDFGSFEEFCEQFKQEAVGQFGSGWAWLIY 144          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.260e-19
Identity = 51/133 (38.35%), Postives = 65/133 (48.87%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 600
            F L   PY +  L PH+S++TL FH+GKHH  YV+ LN  I GT L +  ++E++++     G     FNNAAQ WNH F+W                  IE  FGS               FGSGW WLV K
Sbjct:    3 FKLPALPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIKGTPL-ESCTIEELIL-----GQTGAVFNNAAQIWNHTFYWNSMGPNCGGEPTGPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLK 129          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 56/134 (41.79%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEP-HMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA--FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 594
            F+L   PY  +AL    MSK+TLE+H   HH+AYVDN NK I GTE  +GKS+E++V  +Y  G +  +  FNNA+Q WNH  FW                  +   FGS              QFGSGWAWLV
Sbjct:    3 FELPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLIAGTE-WEGKSVEEIVKGTYCAGAVAQSGIFNNASQHWNHAQFWEMMGPGEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLV 135          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 1
Query:  175 KTGGRISVKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 597
            +   + S  F L   PY   + +PH + +T ++H GKHH +YV NLN  +   E    K LE ++  S +K   +  FNNA+Q WNH FFW                  I +DFGS              QFGSGW W+VY
Sbjct:    5 RKANQTSYPFILPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDREELQKKDLEGIIKWS-SKNSEVTVFNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVVY 144          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.263e-19
Identity = 48/135 (35.56%), Postives = 64/135 (47.41%), Query Frame = 1
Query:  193 SVKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 597
            S  F L   PY   + +PH +++T ++H GKHH +YV NLN  I   E    K LE+++  S    + +   NNA+Q WNH FFW                  I +DFGS              QFGSGW W+VY
Sbjct:   11 SYPFILPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDREELQKKDLEEIIEWSSQNAE-VAILNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWVVY 144          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  223 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 591
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_PLAMA (Superoxide dismutase [Fe] OS=Plasmodium malariae GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  223 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 591
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGGIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
The following BLAST results are available for this feature:
BLAST of FC923377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODF_RICBR1.014e-2039.26Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_PSEHT1.729e-2041.22Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODF_RICFE2.949e-2038.52Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODF_RICCN1.911e-1937.04Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_BABBO3.260e-1938.35Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODF_RHOCA5.561e-1941.79Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_RICTY7.263e-1934.75Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_RICPR7.263e-1935.56Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_PLAVI4.708e-1840.65Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAMA4.708e-1840.65Superoxide dismutase [Fe] OS=Plasmodium malariae G... [more]

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Properties
Property NameValue
Genbank descriptionC31704D05EF StrClemenN Citrus clementina cDNA clone C31704D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923377 ID=FC923377; Name=FC923377; organism=Citrus clementina; type=EST; length=647bp
GGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAATATATA
AGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGT
TGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGG
AGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGTGAA
ATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATA
TGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTAT
GTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAA
GTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTC
CAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAA
TCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACT
GATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGG
CGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTATACAAG
CCAATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCG
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