FC923377

Overview
NameFC923377
Unique NameFC923377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  223 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 591
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  223 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 591
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  223 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 591
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.708e-18
Identity = 52/133 (39.10%), Postives = 65/133 (48.87%), Query Frame = 1
Query:  196 VKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 594
            + F L   PY  NALEPH+SK+TLEFH  KHH  YV+ LN  + GTE  + K+LE+++     +      +NNAAQAWNH F+W                 L    FG                FGSGW WLV
Sbjct:    1 MSFQLPQLPYAYNALEPHISKETLEFHHDKHHATYVNKLNGLVKGTE-QEHKTLEELI----KQKPTQAIYNNAAQAWNHAFYWKCMCGCGVKPSEQLIAKLTAA-FGGLEEFKKKFTEKAVGHFGSGWCWLV 127          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 55/134 (41.04%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 600
            F+L   PY  +AL P+MS++TLE+H  KHH AYV N NK      L D  SLED+V  SY  G   P FNNA Q +NH  FW                   I+ D G               QFGSGWAWL  K
Sbjct:    3 FELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSD-LSLEDIVKKSY--GTNQPLFNNAGQHYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWLSVK 133          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.516e-16
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  220 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 591
            PY ++AL P +SK+T+EFH GKH + YVDNLNK I+GTE  +   L  +V  S  +G +   FNNA Q  NH+ ++                  I++ FGS             T FGSGW WL
Sbjct:    9 PYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS--EGGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWL 126          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHD-FFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 591
            +++   PY  NALEP +S+ T+++H+GKH + YV+NLN  + GTE  +GK++E  ++AS   G +   FNNA Q  NH  +F                   I+RDFGS               FGSGWAWL
Sbjct:    3 YEMPKLPYANNALEPVISQQTIDYHYGKHLQTYVNNLNSLVPGTEY-EGKTVE-AIVASAPDGAI---FNNAGQVLNHTLYFLQFAPKPAKNEPAGKLGEAIKRDFGSFENFKKEFNAASVGLFGSGWAWL 128          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 50/138 (36.23%), Postives = 63/138 (45.65%), Query Frame = 1
Query:  199 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDV--VIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKP 603
            +F   P PY  NAL+P + + T+E H+GKHH+AYVDNLN QI      D   L  +   I+ YN        NN    +NH FFW                   I +DFGS              +FGSGWAWL+  P
Sbjct:   24 EFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKTYPELDKTDLIQLQKQISKYNTA----VRNNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIVTP 157          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 50/139 (35.97%), Postives = 64/139 (46.04%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 597
            F+L+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY 134          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 50/139 (35.97%), Postives = 64/139 (46.04%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 597
            F+L+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE   GK L  ++  S N G     FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKDTEFA-GKDLVSIIKTS-NGG----VFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY 134          
The following BLAST results are available for this feature:
BLAST of FC923377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODF_PLAFX4.708e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAFA4.708e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAF74.708e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_ENTHI4.708e-1839.10Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODF_RHIME1.160e-1641.04Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_PORGI7.516e-1638.71Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODF_BACFR2.856e-1537.40Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODM_ACIAD4.872e-1536.23Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODF_CAMJJ4.872e-1535.97Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE4.872e-1535.97Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]

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Properties
Property NameValue
Genbank descriptionC31704D05EF StrClemenN Citrus clementina cDNA clone C31704D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923377 ID=FC923377; Name=FC923377; organism=Citrus clementina; type=EST; length=647bp
GGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAATATATA
AGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGT
TGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGG
AGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGTGAA
ATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATA
TGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTAT
GTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAA
GTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTC
CAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAA
TCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACT
GATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGG
CGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTATACAAG
CCAATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCG
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