FC923377

Overview
NameFC923377
Unique NameFC923377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 46/133 (34.59%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 594
            F+L   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYGFDALEPHIDKQTMEIHHDKHHNTYVTKLNAAVEGTDL-ESKSIEEIVANLDSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDAFKEEFADKAAARFGSGWAWLV 132          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 46/133 (34.59%), Postives = 61/133 (45.86%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 594
            F+L   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S  +       NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYATDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDL-ESKSIEEIVANLDSVPEDIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 594
            F+L   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDL-EAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 46/133 (34.59%), Postives = 60/133 (45.11%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 594
            F+L   PY  +ALEPH+ K T+E H  KHH  YV  LN  + GT+L + KS+E++V  + S          NN     NH  FW                  I+  +GS              +FGSGWAWLV
Sbjct:    3 FELPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDL-EAKSIEEIVANLDSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDK--IKEQWGSLDEFKKEFADKAAARFGSGWAWLV 132          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 47/133 (35.34%), Postives = 62/133 (46.62%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 594
            F+L   PY  +ALEP++ K+T+E H  KHH  YV  LN  I GT+L + KS+E++V  + S          NN     NH  FW                  I+ ++GS              QFGSGWAWLV
Sbjct:    3 FELPNLPYEFDALEPYIDKETMEIHHDKHHNTYVTKLNAAIEGTDL-ENKSIEEIVANLDSVPSDIQTAVRNNGGGHLNHSLFWQLLTPNSEEKGTVIDK--IKEEWGSLDKFKDEFAKKAAGQFGSGWAWLV 132          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 47/139 (33.81%), Postives = 62/139 (44.60%), Query Frame = 1
Query:  202 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL-------IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVY 597
            F+L+  PY  NA    +S +T  +H GKHH  YV NLN  I  TE    K L  ++ +S         FNNAAQ +NHDF++                 +       +E++FGS               FGSGW WLVY
Sbjct:    2 FELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKYTEFA-SKDLVSIIKSSSG-----GVFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAALEKEFGSLENFKAEFIKGATGVFGSGWFWLVY 134          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 49/141 (34.75%), Postives = 62/141 (43.97%), Query Frame = 1
Query:  196 VKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 600
            + + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFASLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK 135          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 49/141 (34.75%), Postives = 62/141 (43.97%), Query Frame = 1
Query:  196 VKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 600
            + + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 49/141 (34.75%), Postives = 62/141 (43.97%), Query Frame = 1
Query:  196 VKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 600
            + + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D +PA       NNA    NH  FW                  IERDFGS             T+FGSGWAWLV K
Sbjct:    1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFADLPVEELI----TKLDQVPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLK 135          
BLAST of FC923377 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 49/141 (34.75%), Postives = 62/141 (43.97%), Query Frame = 1
Query:  196 VKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYK 600
            + + L   PY  +ALEPH  K T+E H  KHH+ YV+N N  +          +E+++     K D LPA       NNA    NH  FW                  IERDFGS             ++FGSGWAWLV K
Sbjct:    1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELI----TKLDQLPADKKTVLRNNAGGHANHSLFW--KGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLK 135          
The following BLAST results are available for this feature:
BLAST of FC923377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODM_STAS17.035e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODM_STAHJ7.035e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]
SODM_STAES7.035e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ7.035e-1434.59Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STACA7.035e-1435.34Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODF_CAMCO7.035e-1433.81Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODM_SALTY9.188e-1434.75Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_SHIFL1.200e-1334.75Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_SALTI1.200e-1334.75Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM_ECOLI1.200e-1334.75Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionC31704D05EF StrClemenN Citrus clementina cDNA clone C31704D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923377 ID=FC923377; Name=FC923377; organism=Citrus clementina; type=EST; length=647bp
GGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAAGCTGTAATATATA
AGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCTCCAACAATTTGGT
TGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATTGCCTTTTCATTGG
AGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCCGAATTTCTGTGAA
ATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCTCTGGAGCCACATA
TGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCACCACAGAGCTTAT
GTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGCTTGGTGATGGAAA
GTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAGGGTGACTTGCTTC
CAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGACTTCTTCTGGGAA
TCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTGAACTTCTAGGACT
GATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTTGAGGAATTCAAGG
CGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTATACAAG
CCAATAATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCG
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