FC923378

Overview
NameFC923378
Unique NameFC923378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA3_YEAST (NEDD8-activating enzyme E1 catalytic subunit OS=Saccharomyces cerevisiae GN=UBA3 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.346e-28
Identity = 71/149 (47.65%), Postives = 95/149 (63.76%), Query Frame = 2
Query:  221 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQ----PMVDGGTEGFKGHGRVI 652
            +ILV+GAGGLGCE+LK+L +  F K + ++D+D IE++NLNRQFLF  +D+GKPKA+VAA+ V  R   + +V H   +     SFY DF  I+ GLD+IE R +IN         ET  K   E+N     P +DGGTEG KGH + I
Sbjct:    4 KILVLGAGGLGCEILKNLTMLSFVKQVHIVDIDTIELTNLNRQFLFCDKDIGKPKAQVAAQYVNTRFPQLEVVAHVQDLTTLPPSFYKDFQFIISGLDAIEPRRFIN---------ETLVKLTLESNYEICIPFIDGGTEGLKGHVKTI 143          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: SAE2_DICDI (SUMO-activating enzyme subunit 2 OS=Dictyostelium discoideum GN=uba2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 62/152 (40.79%), Postives = 95/152 (62.50%), Query Frame = 2
Query:  203 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDI--SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            D  +  +ILVVGAGG+GCELLK+L L+GFKN+++ID+D I++SNLNRQFLFR + +G  KA++A + VM+    VNI  H   ++  +    F+  F++++  LD+I AR ++N +  S              + PM++ GT G+ G   VI
Sbjct:   18 DKIQTCKILVVGAGGIGCELLKNLVLTGFKNIDIIDLDTIDISNLNRQFLFRKQHIGMSKAKIAKESVMKYNEQVNITAHHGDVKSSEFGSEFFKQFDLVMNALDNISARRHVNRLCLS-------------VDVPMIESGTAGYLGQVSVI 156          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: SAE2_DANRE (SUMO-activating enzyme subunit 2 OS=Danio rerio GN=uba2 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 9.648e-27
Identity = 69/166 (41.57%), Postives = 102/166 (61.45%), Query Frame = 2
Query:  161 LVGPTFEPGAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            LVGP  +   +L D L    R+LVVGAGG+GCELLK+L L+GFKN+EVID+D I+VSNLNRQFLF+ + VGK KA+VA + V+      NI  +   I   D ++ F+ +F +++  LD+  AR+++N +  +              + P+++ GT G+ G   VI
Sbjct:    4 LVGPLRK---QLADSLSS-CRVLVVGAGGIGCELLKNLVLTGFKNIEVIDLDTIDVSNLNRQFLFQKKHVGKSKAQVAKESVLRFCPSANITAYHDSIMNPDYNVEFFRNFQLVMNALDNRAARNHVNRMCLA-------------ADIPLIESGTAGYLGQVTVI 152          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: SAE2_XENTR (SUMO-activating enzyme subunit 2 OS=Xenopus tropicalis GN=uba2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 59/147 (40.14%), Postives = 92/147 (62.59%), Query Frame = 2
Query:  218 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            +R+LVVGAGG+GCELLK+L L+GF NL+VID+D I+VSNLNRQFLF+ + VG+ KA+VA + V++     NI  +   I   D ++ F+  F +++  LD+  AR+++N +  +                P+++ GT G+ G   V+
Sbjct:   18 SRLLVVGAGGIGCELLKNLVLTGFINLDVIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFCPEANITAYHDSIMNPDYNVEFFKQFTMVMNALDNNAARNHVNRMCLA-------------AGIPLIESGTAGYLGQVTVV 151          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: SAE2A_XENLA (SUMO-activating enzyme subunit 2-A OS=Xenopus laevis GN=uba2-A PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.482e-24
Identity = 60/147 (40.82%), Postives = 91/147 (61.90%), Query Frame = 2
Query:  218 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            +R+LVVGAGG+GCELLK+L L+GF NL+VID+D I+VSNLNRQFLF+ + VG+ KA+VA + V++     NI  +   I   D ++ F+  F + +  LD+  AR+++N +  +                P+++ GT G+ G   VI
Sbjct:   18 SRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFCPDANITAYHDSIMNPDYNVEFFKQFTMAMNALDNNAARNHVNRMCLA-------------AGIPLIESGTAGYLGQVSVI 151          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: SAE2B_XENLA (SUMO-activating enzyme subunit 2-B OS=Xenopus laevis GN=uba2-B PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.703e-23
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 2
Query:  218 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            +R+LVVGAGG+GCELLK+L L+GF NL+VID+D I+VSNLNRQFLF+ + VG+ KA+VA + V++     +I  +   I   D ++ F+  F + +  LD+  AR+++N +  +                P+++ GT G+ G   VI
Sbjct:   18 SRLLVVGAGGIGCELLKNLVLTGFTNLDVIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFCPDASITAYHDSIMNPDYNVEFFKQFTMAMNALDNNAARNHVNRMCLA-------------AGIPLIESGTAGYLGQVSVI 151          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: SAE2_HUMAN (SUMO-activating enzyme subunit 2 OS=Homo sapiens GN=UBA2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.224e-23
Identity = 56/141 (39.72%), Postives = 91/141 (64.54%), Query Frame = 2
Query:  221 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKG 637
            R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA + V++     NIV +   I   D ++ F+  F +++  LD+  AR+++N +  +              + P+++ GT G+ G
Sbjct:   19 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLA-------------ADVPLIESGTAGYLG 146          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: SAE2_MOUSE (SUMO-activating enzyme subunit 2 OS=Mus musculus GN=Uba2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.794e-23
Identity = 56/141 (39.72%), Postives = 90/141 (63.83%), Query Frame = 2
Query:  221 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKG 637
            R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA + V++     NI  H   I   D ++ F+  F +++  LD+  AR+++N +  +              + P+++ GT G+ G
Sbjct:   19 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFHPQANIEAHHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLA-------------ADVPLIESGTAGYLG 146          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA2_SCHPO (Ubiquitin-activating enzyme E1-like OS=Schizosaccharomyces pombe GN=uba2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.212e-22
Identity = 56/147 (38.10%), Postives = 91/147 (61.90%), Query Frame = 2
Query:  218 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            A++L+VGAGG+GCELLK+L +SG K + +ID+D I++SNLNRQFLFR + V +PKA VAAK        V +  +   I++   +++++  F+++   LD+++AR ++N             K     + P+++ GT GF G  +VI
Sbjct:   26 AKVLLVGAGGIGCELLKNLLMSGVKEVHIIDLDTIDLSNLNRQFLFRKKHVKQPKAIVAAKTASSFNPNVKLEAYHANIKEDRFNVAWFRQFDLVFNALDNLDARRHVN-------------KQCLLASVPLIESGTTGFLGQVQVI 159          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: SAE2_CAEEL (SUMO-activating enzyme subunit uba-2 OS=Caenorhabditis elegans GN=uba-2 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 7.155e-22
Identity = 56/147 (38.10%), Postives = 89/147 (60.54%), Query Frame = 2
Query:  218 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            ++ILV+GAGG+GCELLK+LA++GF+ + VID+D I++SNLNRQFLFR E V   KA  A + V +    + +      I +K  ++ F+  ++I++  LD+  AR+Y+N +                 N+P++D G+ G+ G   VI
Sbjct:   14 SKILVIGAGGIGCELLKNLAVTGFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSKAATATQVVKQFCPQIELTFDHDSIFEKKYNMEFFQAYDIVLNALDNRAARNYVNRMC-------------HAANRPLIDSGSGGYFGQVSVI 147          
The following BLAST results are available for this feature:
BLAST of FC923378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UBA3_YEAST1.346e-2847.65NEDD8-activating enzyme E1 catalytic subunit OS=Sa... [more]
SAE2_DICDI5.656e-2740.79SUMO-activating enzyme subunit 2 OS=Dictyostelium ... [more]
SAE2_DANRE9.648e-2741.57SUMO-activating enzyme subunit 2 OS=Danio rerio GN... [more]
SAE2_XENTR4.482e-2440.14SUMO-activating enzyme subunit 2 OS=Xenopus tropic... [more]
SAE2A_XENLA4.482e-2440.82SUMO-activating enzyme subunit 2-A OS=Xenopus laev... [more]
SAE2B_XENLA1.703e-2340.14SUMO-activating enzyme subunit 2-B OS=Xenopus laev... [more]
SAE2_HUMAN2.224e-2339.72SUMO-activating enzyme subunit 2 OS=Homo sapiens G... [more]
SAE2_MOUSE3.794e-2339.72SUMO-activating enzyme subunit 2 OS=Mus musculus G... [more]
UBA2_SCHPO3.212e-2238.10Ubiquitin-activating enzyme E1-like OS=Schizosacch... [more]
SAE2_CAEEL7.155e-2238.10SUMO-activating enzyme subunit uba-2 OS=Caenorhabd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31704D06EF StrClemenN Citrus clementina cDNA clone C31704D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923378 ID=FC923378; Name=FC923378; organism=Citrus clementina; type=EST; length=654bp
AAGACCCAGCGTCAAAGCCAAGCTATCAGCATATTTTCGCAACGGCTAAA
TCAGAACCAAATACAGTGATAGTAAGCGAGTGTGAGAATTGTTGCAAATG
GCTGACACGGCACCGAGCCGATCCCGAGACCTAGACAAGCTCTTACTCCG
AGCCGGTAATCTCGTGGGCCCCACTTTCGAACCCGGCGCAGAATTGAGAG
ATGACTTACAAGAATATGCGCGAATTTTGGTTGTTGGAGCCGGTGGATTG
GGCTGCGAATTGTTGAAAGACTTAGCTTTATCGGGTTTTAAAAACCTAGA
GGTCATTGATATGGACCGTATCGAAGTTTCGAATCTCAATCGCCAGTTTC
TTTTCAGGATGGAAGATGTTGGTAAGCCAAAGGCAGAGGTGGCAGCAAAG
CGTGTCATGGAGAGAGTTAGTGGTGTAAATATTGTCCCACATTTTTGCCG
AATTGAGGATAAAGACATTTCATTTTACAATGATTTTAATATCATTGTCC
TTGGTCTCGATTCCATCGAGGCTCGGAGCTATATAAATGCTGTAGCATGT
AGTTTTCTTGAATATGAGACTGATGACAAGCCACGAGAAGAAACAAATCA
ACCCATGGTAGATGGGGGTACTGAAGGTTTTAAGGGTCATGGCAGGGTTA
TTAT
back to top