FC923378

Overview
NameFC923378
Unique NameFC923378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA2_YEAST (Ubiquitin-activating enzyme E1-like OS=Saccharomyces cerevisiae GN=UBA2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.006e-20
Identity = 54/144 (37.50%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  218 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD---ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGH 640
            +R L+VGAGG+G ELLKD+ L  F  + ++D+D I++SNLNRQFLFR +D+ +PK+  A K V +  +   +VP+   + D     + ++  F+II   LD++ AR Y+N ++  FL            + P+++ GT GF G+
Sbjct:   22 SRCLLVGAGGIGSELLKDIILMEFGEIHIVDLDTIDLSNLNRQFLFRQKDIKQPKSTTAVKAV-QHFNNSKLVPYQGNVMDISTFPLHWFEQFDIIFNALDNLAARRYVNKIS-QFL------------SLPLIESGTAGFDGY 151          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.111e-17
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  224 ILVVGAGGLGCELLKDLALSGFKN------LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYND-----FNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            I +VG G +GCE+LK+ AL G         + V D D IE SNLNRQFLFR   + KPK+  AA   ++  S + I  H  ++     + YND      ++I+  LD++EAR Y+++   + L             +P++D GT G KGH  VI
Sbjct:  463 IFLVGCGAIGCEMLKNFALLGVGTSKEKGMITVTDPDLIEKSNLNRQFLFRPHHIQKPKSYTAADATLKINSQIKIDAHLNKVCPTTETIYNDEFYTKQDVIITALDNVEARRYVDSRCLANL-------------RPLLDSGTMGTKGHTEVI 603          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.930e-17
Identity = 60/165 (36.36%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYND-----FNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRV 649
            GA  ++ L+     L+VGAG +GCELLK  AL G        L V+DMD IE SNL+RQFLFR +DVG+PKAEVAA         + ++P    ++      Y D      + +   LDS +AR Y+ A    +L             +P+++ GT G  G   V
Sbjct:  423 GAGFQEKLRRQ-HYLLVGAGAIGCELLKVFALVGLGAGNSGGLTVVDMDHIERSNLSRQFLFRSQDVGRPKAEVAAAAARGLNPDLQVIPLTYPLDPTTEHIYGDNFFSRVDGVAAALDSFQARRYVAARCTHYL-------------KPLLEAGTSGTWGSATV 573          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  224 ILVVGAGGLGCELLKDLALSGFKN------LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYND-----FNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            I +VG G +GCE+LK+ AL G         + V D D IE SNLNRQFLFR   + KPK+  AA+  ++    + I  H  ++     S Y+D      +II+  LD++EAR Y+++   + L             +P++D GT G KGH  +I
Sbjct:  463 IFLVGCGAIGCEMLKNFALLGVGTGREKGMVTVTDPDLIEKSNLNRQFLFRPHHIQKPKSYTAAEATLKINPQLKIDAHLNKVCPATESIYSDEFYTKQDIIITALDNVEARRYVDSRCLANL-------------RPLLDSGTMGTKGHTEII 603          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA1_SCHPO (Ubiquitin-activating enzyme E1 1 OS=Schizosaccharomyces pombe GN=ptr3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 60/168 (35.71%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA--AKRVMERVSGVNIVPHFCRI--EDKDI---SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G+E ++ +   +  LV GAG +GCE+LK+ A+ G       ++ V DMD IE SNLNRQFLFR  DVGK K+E A  A  +M       I  +  R+  E + I    F+   +++   LD++EAR Y++   C F E            +P+++ GT G KG+ +V+
Sbjct:  418 GSEFQEKIASLSTFLV-GAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDR-RCVFFE------------KPLLESGTLGTKGNTQVV 571          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.001e-15
Identity = 56/157 (35.67%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  218 ARILVVGAGGLGCELLKDLALSGFKN-----LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVM----ERVSGVNIVPHFCRIEDKDI---SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            +++ +VG+G +GCE+LK+ AL G  +     + V D D IE SNLNRQFLFR +DVGK K+EVAA+ V     +    +N        E ++I   SF+   + +   LD+++AR+Y++   C F              +P+++ GT G KG+ +VI
Sbjct:  435 SKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDR-RCVFY------------RKPLLESGTLGTKGNTQVI 578          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA1Y_MOUSE (Ubiquitin-like modifier-activating enzyme 1 Y OS=Mus musculus GN=Ube1ay PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 56/166 (33.73%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-----DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G++L++ L +  +  +VGAG +GCELLK+ A+ G        + V DMD IE SNLNRQFLFR  D+ K K+E AA  V +    + I  H  R+  +     D  F+   + +   LD+++AR Y+             D+      +P+++ GT G KG+ +V+
Sbjct:  458 GSDLQEKLGKQ-KYFLVGAGAIGCELLKNFAMIGLGCGEDGEITVTDMDTIEKSNLNRQFLFRPWDITKLKSETAAAAVRDINPHIRIFSHQNRVGPETEHVYDDDFFQKLDGVANALDNVDARLYV-------------DRRCVYYRKPLLESGTLGTKGNVQVV 609          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 58/170 (34.12%), Postives = 94/170 (55.29%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK---------DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G+ L++ L+E A+I +VG+G LGCE LK+LAL G       NL V D D IE SNL+RQFLFR  ++G+PK+ VAA   M     +N   H   ++++         + +F+ + + +V  LD++ AR YI++    F              +P+++ GT G K + +++
Sbjct:  453 GSTLQNKLEE-AKIFMVGSGALGCEFLKNLALMGISCSQNGNLTVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAMV----INPKLHVEALQNRASPETENVFNDAFWENLDAVVNALDNVTARMYIDSRCVYF-------------QKPLLESGTLGAKCNTQMV 604          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.912e-15
Identity = 57/170 (33.53%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK---------DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G++L++ L+E A+I +VG+G LGCE LK+LAL G       NL + D D IE SNL+RQFLFR  ++G+PK+ VAA   M     +N   H   ++++         + +F+ + + +V  LD++ AR YI++    F              +P+++ GT G K + +++
Sbjct:  453 GSKLQNKLEE-AKIFMVGSGALGCEFLKNLALMGISCSQNGNLTLTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAMV----INPKLHVEALQNRASPETENVFNDAFWENLDAVVNALDNVTARMYIDSRCVYF-------------QKPLLESGTLGAKCNTQMV 604          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.912e-15
Identity = 56/166 (33.73%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLE-----VIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-----DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G++L++ L +  +  +VGAG +GCELLK+ A+ G    E     V DMD IE SNLNRQFLFR  DV K K++ AA  V +    + +  H  R+        D  F+ + + +   LD+++AR Y+             D+      +P+++ GT G KG+ +V+
Sbjct:  459 GSDLQERLGKQ-KYFLVGAGAIGCELLKNFAMIGLGCAEDGEIVVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPHIRVTSHQNRVGPDTERIYDDDFFQNLDGVTNALDNVDARMYM-------------DRRCVYYRKPLLESGTLGTKGNVQVV 610          
The following BLAST results are available for this feature:
BLAST of FC923378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UBA2_YEAST3.006e-2037.50Ubiquitin-activating enzyme E1-like OS=Saccharomyc... [more]
UBA6_HUMAN3.111e-1736.36Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]
UBA7_HUMAN6.930e-1736.36Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]
UBA6_MOUSE2.633e-1635.71Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA1_SCHPO5.867e-1635.71Ubiquitin-activating enzyme E1 1 OS=Schizosaccharo... [more]
UBA1_YEAST1.001e-1535.67Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]
UBA1Y_MOUSE1.707e-1533.73Ubiquitin-like modifier-activating enzyme 1 Y OS=M... [more]
UBE12_WHEAT2.229e-1534.12Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT2.912e-1533.53Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBA1_BOVIN2.912e-1533.73Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]

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Properties
Property NameValue
Genbank descriptionC31704D06EF StrClemenN Citrus clementina cDNA clone C31704D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923378 ID=FC923378; Name=FC923378; organism=Citrus clementina; type=EST; length=654bp
AAGACCCAGCGTCAAAGCCAAGCTATCAGCATATTTTCGCAACGGCTAAA
TCAGAACCAAATACAGTGATAGTAAGCGAGTGTGAGAATTGTTGCAAATG
GCTGACACGGCACCGAGCCGATCCCGAGACCTAGACAAGCTCTTACTCCG
AGCCGGTAATCTCGTGGGCCCCACTTTCGAACCCGGCGCAGAATTGAGAG
ATGACTTACAAGAATATGCGCGAATTTTGGTTGTTGGAGCCGGTGGATTG
GGCTGCGAATTGTTGAAAGACTTAGCTTTATCGGGTTTTAAAAACCTAGA
GGTCATTGATATGGACCGTATCGAAGTTTCGAATCTCAATCGCCAGTTTC
TTTTCAGGATGGAAGATGTTGGTAAGCCAAAGGCAGAGGTGGCAGCAAAG
CGTGTCATGGAGAGAGTTAGTGGTGTAAATATTGTCCCACATTTTTGCCG
AATTGAGGATAAAGACATTTCATTTTACAATGATTTTAATATCATTGTCC
TTGGTCTCGATTCCATCGAGGCTCGGAGCTATATAAATGCTGTAGCATGT
AGTTTTCTTGAATATGAGACTGATGACAAGCCACGAGAAGAAACAAATCA
ACCCATGGTAGATGGGGGTACTGAAGGTTTTAAGGGTCATGGCAGGGTTA
TTAT
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