FC923378

Overview
NameFC923378
Unique NameFC923378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.803e-15
Identity = 57/166 (34.34%), Postives = 89/166 (53.61%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGF---KNLEVI--DMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-----DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G++L++ L    +  +VGAG +GCELLK+ A+ G    +N E+I  DMD IE SNLNRQFLFR  DV K K++ AA  V +    + +  H  R+        D  F+   + +   LD+++AR Y+             D+      +P+++ GT G KG+ +V+
Sbjct:  459 GSDLQEKLGRQ-KYFLVGAGAIGCELLKNFAMIGLGCGENGEIIVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVHQMNPHIRVTSHQNRVGPDTERIYDDDFFQTLDGVANALDNVDARMYM-------------DRRCVYYRKPLLESGTLGTKGNVQVV 610          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.803e-15
Identity = 55/166 (33.13%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-----DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G++L++ L +  +  +VGAG +GCELLK+ A+ G        + V DMD IE SNLNRQFLFR  DV K K++ AA  V +    + +  H  R+        D  F+ + + +   LD+++AR Y+             D+      +P+++ GT G KG+ +V+
Sbjct:  459 GSDLQEKLGKQ-KYFLVGAGAIGCELLKNFAMIGLGCGEGGEIIVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPHIRVTSHQNRVGPDTERIYDDDFFQNLDGVANALDNVDARMYM-------------DRRCVYYRKPLLESGTLGTKGNVQVV 610          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 55/166 (33.13%), Postives = 88/166 (53.01%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-----DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G++L++ L +  +  +VGAG +GCELLK+ A+ G        + V DMD IE SNLNRQFLFR  DV K K++ AA  V +    + +  H  R+        D  F+ + + +   LD+++AR Y+             D+      +P+++ GT G KG+ +V+
Sbjct:  459 GSDLQEKLGKQ-KYFLVGAGAIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPYIQVTSHQNRVGPDTERIYDDDFFQNLDGVANALDNVDARMYM-------------DRRCVYYRKPLLESGTLGTKGNVQVV 610          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.967e-15
Identity = 55/157 (35.03%), Postives = 83/157 (52.87%), Query Frame = 2
Query:  212 EYARILVVGAGGLGCELLKDLALSGF----KNL-EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYND--FNI---IVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            E     +VGAG +GCE+LK+ A+ G     K L  V DMD IE SNLNRQFLFR  D+ + K++ AA  V      +N+  +  R+     S YN+  FN    +   LD++EAR Y+++    +              +P+++ GT G KG+ +V+
Sbjct:  427 ENLNYFLVGAGAIGCEMLKNFAMMGLGAGPKGLVHVTDMDTIEKSNLNRQFLFRSSDIQQLKSQTAANAVRVMNPDLNVKAYSLRVGPDTESHYNEEFFNSLDGVCNALDNVEARLYMDSQCVYY-------------GKPLLESGTLGTKGNTQVV 570          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 55/166 (33.13%), Postives = 87/166 (52.41%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-----DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFKGHGRVI 652
            G++ ++ L +  +  +VGAG +GCELLK+ A+ G        + V DMD IE SNLNRQFLFR  DV K K++ AA  V +    + +  H  R+        D  F+ + + +   LD+I+AR Y+             D+      +P+++ GT G KG+ +V+
Sbjct:  459 GSDFQEKLSKQ-KYFLVGAGAIGCELLKNFAMIGLGCGEGGEVVVTDMDTIEKSNLNRQFLFRPWDVTKLKSDTAAAAVRQMNPYIQVTSHQNRVGPDTERIYDDDFFQNLDGVANALDNIDARMYM-------------DRRCVYYRKPLLESGTLGTKGNVQVV 610          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.929e-13
Identity = 52/164 (31.71%), Postives = 87/164 (53.05%), Query Frame = 2
Query:  185 GAELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDI---------SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETNQPMVDGGTEGFK 634
            G++L+  ++E A   VVG+G LGCE LK+LAL G        L + D D IE SNL+RQFLFR  ++G+ K+ VAA       S +N   H   ++++           +F+   ++++  LD++ AR Y++ + C + +            +P+++ GT G K
Sbjct:  456 GSKLQKKMEE-ANTFVVGSGALGCEFLKNLALMGVSCSSKGKLTITDDDIIEKSNLSRQFLFRDWNIGQAKSTVAA----TAASAINPSLHIDALQNRACPDTENVFHDTFWEGLDVVINALDNVNARMYMD-MRCLYFQ------------KPLLESGTLGAK 601          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: MOEB_PORPU (Probable molybdopterin biosynthesis protein moeB OS=Porphyra purpurea GN=moeB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 2
Query:  224 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-KDISFYNDFNIIVLGLDSIEARSYINAVAC 550
            IL VGAGGLG   L  LA SG   + ++D D I++SNL RQ L+ + D+G  KA +A K+++E     N+     R++    I     ++II+ G D+  +R YI + +C
Sbjct:   41 ILCVGAGGLGSPALIYLAASGIGKIGIVDNDIIDISNLQRQILYTVNDIGLSKAYIAKKKILEINPTCNVQIFNTRLQSINAIEIIRQYDIIIDGTDNFGSR-YIISDSC 149          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: MOCS3_CAEBR (Adenylyltransferase and sulfurtransferase MOCS3 OS=Caenorhabditis briggsae GN=CBG01549 PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.331e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  224 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAV 544
            +L+VGAGGLGC +   L  +G   L ++D DRI + NL+RQ  ++ + VG+ K++  A  V  + SGV  V H   ++  + +  + +++I+    D++  R  IN V
Sbjct:   40 VLIVGAGGLGCPVATYLGAAGVGTLGIVDYDRISLDNLHRQVAYKEDQVGQSKSQGLADNVKLQNSGVTTVVHNVSLDSSNAMEIFKNYDIVCDCTDNVATRYLINDV 147          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: UBA4_PICGU (Adenylyltransferase and sulfurtransferase UBA4 OS=Pichia guilliermondii GN=UBA4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = 2
Query:  221 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSF 556
            + LVVGAGGLGC  L  L  +G   + ++D D ++ +NL+RQ L     VG+ K E A   + E    VNI+ +  R+ +K+    + DF++++   DS  +R  IN VA  F
Sbjct:   68 KTLVVGAGGLGCPSLMYLVGAGVGTIGIVDDDLVDETNLHRQVLHSTTSVGRLKCESAKSYLQELNPNVNIITYPVRLSNKNAFEIFADFDLVLDCTDSPASRYLINDVAVYF 180          
BLAST of FC923378 vs. ExPASy Swiss-Prot
Match: MOEB_PORYE (Probable molybdopterin biosynthesis protein moeB OS=Porphyra yezoensis GN=moeB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.351e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  218 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE-DKDISFYNDFNIIVLGLDSIEARSYIN 538
            A++L +GAGGLG   +  LA +G  ++ +ID D I++SNL RQ L+R  D+G  K E+A K++++      +     R+  +  I     ++II+ G D+ + R  +N
Sbjct:   39 AKVLFIGAGGLGSPGIIYLAAAGIGSIGIIDDDIIDLSNLQRQILYRCNDIGYSKVEIAKKKILDLNPQCIVTVFKTRLSYENSIDIIRQYDIIIDGSDNFDTRYLLN 146          
The following BLAST results are available for this feature:
BLAST of FC923378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
UBA1_RABIT3.803e-1534.34Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]
UBA1_HUMAN3.803e-1533.13Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_RAT4.967e-1533.13Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_DICDI4.967e-1535.03Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]
UBA1_MOUSE6.487e-1533.13Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBE13_WHEAT7.929e-1331.71Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
MOEB_PORPU3.331e-1137.27Probable molybdopterin biosynthesis protein moeB O... [more]
MOCS3_CAEBR3.331e-1133.33Adenylyltransferase and sulfurtransferase MOCS3 OS... [more]
UBA4_PICGU4.351e-1136.28Adenylyltransferase and sulfurtransferase UBA4 OS=... [more]
MOEB_PORYE4.351e-1133.33Probable molybdopterin biosynthesis protein moeB O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31704D06EF StrClemenN Citrus clementina cDNA clone C31704D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923378 ID=FC923378; Name=FC923378; organism=Citrus clementina; type=EST; length=654bp
AAGACCCAGCGTCAAAGCCAAGCTATCAGCATATTTTCGCAACGGCTAAA
TCAGAACCAAATACAGTGATAGTAAGCGAGTGTGAGAATTGTTGCAAATG
GCTGACACGGCACCGAGCCGATCCCGAGACCTAGACAAGCTCTTACTCCG
AGCCGGTAATCTCGTGGGCCCCACTTTCGAACCCGGCGCAGAATTGAGAG
ATGACTTACAAGAATATGCGCGAATTTTGGTTGTTGGAGCCGGTGGATTG
GGCTGCGAATTGTTGAAAGACTTAGCTTTATCGGGTTTTAAAAACCTAGA
GGTCATTGATATGGACCGTATCGAAGTTTCGAATCTCAATCGCCAGTTTC
TTTTCAGGATGGAAGATGTTGGTAAGCCAAAGGCAGAGGTGGCAGCAAAG
CGTGTCATGGAGAGAGTTAGTGGTGTAAATATTGTCCCACATTTTTGCCG
AATTGAGGATAAAGACATTTCATTTTACAATGATTTTAATATCATTGTCC
TTGGTCTCGATTCCATCGAGGCTCGGAGCTATATAAATGCTGTAGCATGT
AGTTTTCTTGAATATGAGACTGATGACAAGCCACGAGAAGAAACAAATCA
ACCCATGGTAGATGGGGGTACTGAAGGTTTTAAGGGTCATGGCAGGGTTA
TTAT
back to top