FC923421

Overview
NameFC923421
Unique NameFC923421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923421 vs. ExPASy Swiss-Prot
Match: GCP_METMA (Putative O-sialoglycoprotein endopeptidase OS=Methanosarcina mazei GN=gcp PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.645e-11
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = 3 
Query:  165 LIKQGAEARVF-ESTFVGRRCVVKERFSKKYRHPSLDSKITLKRLNAEARCMTKARRLGVSTPVLYAVDPVQHTLTFEYVEGPSVK 419
            ++  GAEA V+ +    G+R +VKER  K YRH  +D +I  +R   EAR M++ARR GV TP++Y V+  +  L  +++EG  +K
Sbjct:  354 ILDNGAEAVVYLQEGPEGKRALVKERVPKAYRHKEIDERIRRERNRTEARLMSEARRAGVPTPIIYDVE--EFKLKMQFIEGVPIK 437
The following BLAST results are available for this feature:
BLAST of FC923421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GCP_METMA8.645e-1140.70Putative O-sialoglycoprotein endopeptidase OS=Meth... [more]

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Properties
Property NameValue
Genbank descriptionC31704H02EF StrClemenN Citrus clementina cDNA clone C31704H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923421 ID=FC923421; Name=FC923421; organism=Citrus clementina; type=EST; length=489bp
GGAATTTCAAATTGAGCTTGTTCAAGCTTCTGTTTACTGCAAGAATCCGA
TTTGGTTCGTTATAGAAAGAGATGAAGTCGGATGCATCATTCGGGCTGCG
GTAAAGTACTGCCAAGTTGTTCAATATGGAGATTACAGCCAACAGTGAAG
ATGGATCGCTCATTCTCATAAAGCAAGGAGCTGAAGCTAGGGTTTTTGAG
TCAACTTTTGTGGGAAGGAGGTGTGTTGTCAAGGAGCGTTTCTCAAAGAA
ATATAGGCATCCATCTCTGGATTCAAAAATCACTCTCAAACGCCTGAATG
CGGAGGCTAGGTGCATGACCAAAGCTAGAAGACTTGGAGTTTCAACTCCG
GTGCTTTATGCTGTTGATCCTGTTCAGCATACACTGACATTTGAGTATGT
CGAGGGTCCTTCTGTCAAAGATATATTCCTTGAATTTGGTTTGCATGGTA
TCATGGAAGAGCAGTTGGAGGATATTGCATTGCAGATTG
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