FC923424

Overview
NameFC923424
Unique NameFC923424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length366
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.377e-11
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341
            DE ++FVGGLS++  E+ LE  F ++G+I E  ++ +R + R RGFGF+T+ +     DA+  M+G+    R I V++A
Sbjct:    4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.377e-11
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341
            DE ++FVGGLS++  E+ LE  F ++G+I E  ++ +R + R RGFGF+T+ +     DA+  M+G+    R I V++A
Sbjct:    4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353
            D  ++F+GGLSW  T+  L   F +FG++ EC +M +  + R RGFGF+T+ D+  +D  +     E+  +    +V    +AQPKM
Sbjct:   18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKM 104          

HSP 2 Score: 65.4698 bits (158), Expect = 9.750e-11
Identity = 29/79 (36.71%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            +IFVGGLS N T   +++ F++FGK+ +  +M ++ + R RGFGF+T+ +   + + + E+H  E  ++++   KAQPK
Sbjct:  110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEIHFHEINNKMVECKKAQPK 187          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353
            D  ++F+GGLSW  T+  L   F +FG++ EC +M +  + R RGFGF+T+ D+  +D  +     E+  +    +V    +AQPKM
Sbjct:   18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKM 104          

HSP 2 Score: 65.4698 bits (158), Expect = 9.750e-11
Identity = 29/79 (36.71%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350
            +IFVGGLS N T   +++ F++FGK+ +  +M ++ + R RGFGF+T+ +   + + + E+H  E  ++++   KAQPK
Sbjct:  110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEIHFHEINNKMVECKKAQPK 187          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353
            D  ++F+GGLSW  T+  L   F +FG++ EC +M +  + R RGFGF+T+ D+  +D  +     E+  +    +V    +AQPKM
Sbjct:   18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKM 104          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 27/85 (31.76%), Postives = 56/85 (65.88%), Query Frame = 3
Query:   90 AMAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 344
            A A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+  +GR RGFGF+ + +  ++ D + +    +   +VI   +A+
Sbjct:   90 AAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV-DKVMDQKEHKLNGKVIDPKRAK 173          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 27/85 (31.76%), Postives = 56/85 (65.88%), Query Frame = 3
Query:   90 AMAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 344
            A A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+  +GR RGFGF+ + +  ++ D + +    +   +VI   +A+
Sbjct:   90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV-DKVMDQKEHKLNGKVIDPKRAK 173          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362
            +FVG + +  TE QL++ F   G ++  +++ +R +G+P+G+GF  Y D+     A+R ++GREF  R + V+ A  +   E
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362
            +FVG + +  TE QL++ F   G ++  +++ +R +G+P+G+GF  Y D+     A+R ++GREF  R + V+ A  +   E
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341
            DE ++FVGGLS++  E+ LE  F ++G+I E  ++ +R + R RGFGF+T+ +     DA+  M+G+    R I V++A
Sbjct:    4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
The following BLAST results are available for this feature:
BLAST of FC923424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CIRBP_PONAB4.377e-1139.24Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN4.377e-1139.24Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
MSI1H_RAT5.716e-1135.63RNA-binding protein Musashi homolog 1 OS=Rattus no... [more]
MSI1H_MOUSE5.716e-1135.63RNA-binding protein Musashi homolog 1 OS=Mus muscu... [more]
MSI1H_HUMAN5.716e-1135.63RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
HNRPD_MOUSE5.716e-1131.76Heterogeneous nuclear ribonucleoprotein D0 OS=Mus ... [more]
HNRPD_HUMAN5.716e-1131.76Heterogeneous nuclear ribonucleoprotein D0 OS=Homo... [more]
CSTFT_MOUSE5.716e-1132.93Cleavage stimulation factor 64 kDa subunit, tau va... [more]
CSTFT_HUMAN5.716e-1132.93Cleavage stimulation factor 64 kDa subunit, tau va... [more]
CIRBP_RAT5.716e-1139.24Cold-inducible RNA-binding protein OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC31704H05EF StrClemenN Citrus clementina cDNA clone C31704H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923424 ID=FC923424; Name=FC923424; organism=Citrus clementina; type=EST; length=366bp
GTCCCGAACACGTCTAATTAAACAGCTCTAGAGTTTCGCAAAGTGAATAC
ACGACAGAAAATATCAACAGCGAATAATAGTGATTGTTTGCAATGGCTGG
AAAAGACGAGAACAGGATATTTGTCGGAGGGCTGTCCTGGAACGTCACTG
AGCGACAGCTCGAAAACGCGTTTGATCGTTTTGGAAAAATAATCGAGTGC
CAGATCATGTTGGAAAGAGGTTCAGGCCGTCCACGTGGGTTCGGATTTAT
TACATATGCAGACCGTCGGGCGATGGATGATGCTATCAGAGAAATGCATG
GGCGCGAGTTTGGTGATAGGGTCATCTCTGTGAATAAGGCCCAGCCAAAA
ATGGGAGGTGAGGTTT
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