FC923424
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.377e-11 Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341 DE ++FVGGLS++ E+ LE F ++G+I E ++ +R + R RGFGF+T+ + DA+ M+G+ R I V++A Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.377e-11 Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341 DE ++FVGGLS++ E+ LE F ++G+I E ++ +R + R RGFGF+T+ + DA+ M+G+ R I V++A Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353 D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D + E+ + +V +AQPKM Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKM 104 HSP 2 Score: 65.4698 bits (158), Expect = 9.750e-11 Identity = 29/79 (36.71%), Postives = 52/79 (65.82%), Query Frame = 3 Query: 114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 +IFVGGLS N T +++ F++FGK+ + +M ++ + R RGFGF+T+ + + + + E+H E ++++ KAQPK Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353 D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D + E+ + +V +AQPKM Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKM 104 HSP 2 Score: 65.4698 bits (158), Expect = 9.750e-11 Identity = 29/79 (36.71%), Postives = 52/79 (65.82%), Query Frame = 3 Query: 114 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 350 +IFVGGLS N T +++ F++FGK+ + +M ++ + R RGFGF+T+ + + + + E+H E ++++ KAQPK Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEIHFHEINNKMVECKKAQPK 187
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353 D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D + E+ + +V +AQPKM Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKM 104
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 27/85 (31.76%), Postives = 56/85 (65.88%), Query Frame = 3 Query: 90 AMAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 344 A A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++ D + + + +VI +A+ Sbjct: 90 AAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV-DKVMDQKEHKLNGKVIDPKRAK 173
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 27/85 (31.76%), Postives = 56/85 (65.88%), Query Frame = 3 Query: 90 AMAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 344 A A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++ D + + + +VI +A+ Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV-DKVMDQKEHKLNGKVIDPKRAK 173
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTFT_MOUSE (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362 +FVG + + TE QL++ F G ++ +++ +R +G+P+G+GF Y D+ A+R ++GREF R + V+ A + E Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTFT_HUMAN (Cleavage stimulation factor 64 kDa subunit, tau variant OS=Homo sapiens GN=CSTF2T PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362 +FVG + + TE QL++ F G ++ +++ +R +G+P+G+GF Y D+ A+R ++GREF R + V+ A + E Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341 DE ++FVGGLS++ E+ LE F ++G+I E ++ +R + R RGFGF+T+ + DA+ M+G+ R I V++A Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82 The following BLAST results are available for this feature:
BLAST of FC923424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923424 ID=FC923424; Name=FC923424; organism=Citrus clementina; type=EST; length=366bpback to top |