FC923424

Overview
NameFC923424
Unique NameFC923424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length366
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341
            DE ++FVGGLS++  E+ LE  F ++G+I E  ++ +R + R RGFGF+T+ +     DA+  M+G+    R I V++A
Sbjct:    4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11
Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341
            DE ++FVGGLS++  E+ LE  F ++G+I E  ++ +R + R RGFGF+T+ +     DA+  M+G+    R I V++A
Sbjct:    4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341
            +E ++FVGGL++N  E+ LE+ F  FG I E  ++ +R + R RGFGFIT+ +     D +R M+G     R I V+ A
Sbjct:    4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTF2_PONAB (Cleavage stimulation factor 64 kDa subunit OS=Pongo abelii GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362
            +FVG + +  TE QL++ F   G ++  +++ +R +G+P+G+GF  Y D+     A+R ++GREF  R + V+ A  +   E
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTF2_MOUSE (Cleavage stimulation factor 64 kDa subunit OS=Mus musculus GN=Cstf2 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362
            +FVG + +  TE QL++ F   G ++  +++ +R +G+P+G+GF  Y D+     A+R ++GREF  R + V+ A  +   E
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTF2_HUMAN (Cleavage stimulation factor 64 kDa subunit OS=Homo sapiens GN=CSTF2 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362
            +FVG + +  TE QL++ F   G ++  +++ +R +G+P+G+GF  Y D+     A+R ++GREF  R + V+ A  +   E
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTF2_BOVIN (Cleavage stimulation factor 64 kDa subunit OS=Bos taurus GN=CSTF2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11
Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362
            +FVG + +  TE QL++ F   G ++  +++ +R +G+P+G+GF  Y D+     A+R ++GREF  R + V+ A  +   E
Sbjct:   18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11
Identity = 30/87 (34.48%), Postives = 50/87 (57.47%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353
            D  ++F+GGLSW  +   L + F R+G I E  +M +  + R RGFGF+T++D  ++D  +     E+ G++   +V    +A PKM
Sbjct:   27 DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKM 113          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11
Identity = 27/85 (31.76%), Postives = 55/85 (64.71%), Query Frame = 3
Query:   90 AMAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 344
            A A ++E ++F+GGLSW+ T++ L++ F +FG +++C + L+  +GR RGFGF+ + +  ++ D + +    +   +VI   +A+
Sbjct:   88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESV-DKVMDQKEHKLNGKVIDPKRAK 171          
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11
Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 356
            DE ++F+GGL+++  E  LE  F ++G+I E  ++ +R + R RGFGF+T+ +     DA+  M+G+    R I V++A    G
Sbjct:    3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKSSG 86          
The following BLAST results are available for this feature:
BLAST of FC923424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CIRBP_MOUSE5.716e-1139.24Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR5.716e-1139.24Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
RBM3_RAT7.465e-1140.51Putative RNA-binding protein 3 OS=Rattus norvegicu... [more]
CSTF2_PONAB7.465e-1132.93Cleavage stimulation factor 64 kDa subunit OS=Pong... [more]
CSTF2_MOUSE7.465e-1132.93Cleavage stimulation factor 64 kDa subunit OS=Mus ... [more]
CSTF2_HUMAN7.465e-1132.93Cleavage stimulation factor 64 kDa subunit OS=Homo... [more]
CSTF2_BOVIN7.465e-1132.93Cleavage stimulation factor 64 kDa subunit OS=Bos ... [more]
MSIR6_DROME9.750e-1134.48RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
HNRPD_RAT9.750e-1131.76Heterogeneous nuclear ribonucleoprotein D0 OS=Ratt... [more]
CIRBB_XENLA9.750e-1135.71Cold-inducible RNA-binding protein B OS=Xenopus la... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31704H05EF StrClemenN Citrus clementina cDNA clone C31704H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923424 ID=FC923424; Name=FC923424; organism=Citrus clementina; type=EST; length=366bp
GTCCCGAACACGTCTAATTAAACAGCTCTAGAGTTTCGCAAAGTGAATAC
ACGACAGAAAATATCAACAGCGAATAATAGTGATTGTTTGCAATGGCTGG
AAAAGACGAGAACAGGATATTTGTCGGAGGGCTGTCCTGGAACGTCACTG
AGCGACAGCTCGAAAACGCGTTTGATCGTTTTGGAAAAATAATCGAGTGC
CAGATCATGTTGGAAAGAGGTTCAGGCCGTCCACGTGGGTTCGGATTTAT
TACATATGCAGACCGTCGGGCGATGGATGATGCTATCAGAGAAATGCATG
GGCGCGAGTTTGGTGATAGGGTCATCTCTGTGAATAAGGCCCAGCCAAAA
ATGGGAGGTGAGGTTT
back to top