FC923424
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341 DE ++FVGGLS++ E+ LE F ++G+I E ++ +R + R RGFGF+T+ + DA+ M+G+ R I V++A Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 5.716e-11 Identity = 31/79 (39.24%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341 DE ++FVGGLS++ E+ LE F ++G+I E ++ +R + R RGFGF+T+ + DA+ M+G+ R I V++A Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: RBM3_RAT (Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11 Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 341 +E ++FVGGL++N E+ LE+ F FG I E ++ +R + R RGFGFIT+ + D +R M+G R I V+ A Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAMNGESLDGRQIRVDHA 82
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTF2_PONAB (Cleavage stimulation factor 64 kDa subunit OS=Pongo abelii GN=CSTF2 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11 Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362 +FVG + + TE QL++ F G ++ +++ +R +G+P+G+GF Y D+ A+R ++GREF R + V+ A + E Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTF2_MOUSE (Cleavage stimulation factor 64 kDa subunit OS=Mus musculus GN=Cstf2 PE=1 SV=2) HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11 Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362 +FVG + + TE QL++ F G ++ +++ +R +G+P+G+GF Y D+ A+R ++GREF R + V+ A + E Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTF2_HUMAN (Cleavage stimulation factor 64 kDa subunit OS=Homo sapiens GN=CSTF2 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11 Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362 +FVG + + TE QL++ F G ++ +++ +R +G+P+G+GF Y D+ A+R ++GREF R + V+ A + E Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CSTF2_BOVIN (Cleavage stimulation factor 64 kDa subunit OS=Bos taurus GN=CSTF2 PE=2 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.465e-11 Identity = 27/82 (32.93%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 117 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMGGE 362 +FVG + + TE QL++ F G ++ +++ +R +G+P+G+GF Y D+ A+R ++GREF R + V+ A + E Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 99
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3) HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11 Identity = 30/87 (34.48%), Postives = 50/87 (57.47%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVISVNKAQPKM 353 D ++F+GGLSW + L + F R+G I E +M + + R RGFGF+T++D ++D + E+ G++ +V +A PKM Sbjct: 27 DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKM 113
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11 Identity = 27/85 (31.76%), Postives = 55/85 (64.71%), Query Frame = 3 Query: 90 AMAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 344 A A ++E ++F+GGLSW+ T++ L++ F +FG +++C + L+ +GR RGFGF+ + + ++ D + + + +VI +A+ Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESV-DKVMDQKEHKLNGKVIDPKRAK 171
BLAST of FC923424 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.750e-11 Identity = 30/84 (35.71%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 105 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERGSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKMG 356 DE ++F+GGL+++ E LE F ++G+I E ++ +R + R RGFGF+T+ + DA+ M+G+ R I V++A G Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQAGKSSG 86 The following BLAST results are available for this feature:
BLAST of FC923424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923424 ID=FC923424; Name=FC923424; organism=Citrus clementina; type=EST; length=366bpback to top |