FC923465

Overview
NameFC923465
Unique NameFC923465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923465_ssr564 microsatellite FC923465_ssr564:564..575. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14471 contig Ccv1_Contig14471:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.106e-38
Identity = 100/238 (42.02%), Postives = 136/238 (57.14%), Query Frame = 1
Query:   46 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            V  K   L  +  G P +SD ++ T    +++P      VLL+ L+LS DPYMR    +L +         G  + G  V++V++S +  +    +V   + W  +  I   + L K+L      +PLS   G +GMPGLTAY GL E+C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK + GFD AFNYK    L+ ALK+  P+G D YF+NVGG  L+
Sbjct:    2 VKAKSWTLKKHFQGKPTQSDFELKT----VELPPLKNGEVLLEALFLSVDPYMRIASKRLKE---------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTH-FISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLN 224          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 98/234 (41.88%), Postives = 130/234 (55.56%), Query Frame = 1
Query:   46 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG 738
            V  K   L  +  G+P  SD ++ T  +    P      VLL+ L+L+ DPYMR    +L +         G+ + G  V+KV++S +    K  +V     W  +S I   + L K+L      +PLS   G +GMPGLTAY GL E+C  K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+  P+G D YF+NVGG
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAEL----PPLKNGEVLLEALFLTVDPYMRVAAKRLKE---------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHS-ISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGG 220          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.761e-26
Identity = 78/228 (34.21%), Postives = 123/228 (53.95%), Query Frame = 1
Query:   85 GFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNV---PLSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            G P   + ++   ++   V EG    V ++ LYLS DPYMR RM++     ++  +   + + G GV  + +S H N+ K D V     W   + +    ++++ +D  +    LSY+ G +GMPGLT+  G+ E    +    + + VS A+GA G L GQ  +L+GC  VVG  G+ EK   L ++ GFD A NY KE ++   L +  P G+D+YF+NVGG + D
Sbjct:   16 GHPVAENFRVEEVNLPDCVNEGQ---VQVRTLYLSVDPYMRCRMNEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSF-YWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINY-KEGNVAEQLHKLCPAGVDVYFDNVGGDISD 238          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.049e-25
Identity = 74/201 (36.82%), Postives = 110/201 (54.73%), Query Frame = 1
Query:  163 VLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVP--LSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            V ++ LYLS DPYMR RM++     ++  +   + + G G+  + +S H N  K D V       +  +I     L K+    V   LSY+ G +GMPGLT+  G+ E    +    + + VS A+GA G + GQ   L+GC  VVG  G+ EK  LL ++ GFD A NYKK+ ++   L+   P G+D+YF+NVGG + D
Sbjct:   39 VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISD 238          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.052e-25
Identity = 73/201 (36.32%), Postives = 109/201 (54.23%), Query Frame = 1
Query:  163 VLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVP--LSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            V ++ LYLS DPYMR RM++     ++  +   + + G G+  + +S H N  K D V       +  +I     L K+    V   LSY+ G +GMPGLT+  G+ E    +    + + VS A+GA G + GQ    +GC  VVG  G+ EK  LL ++ GFD A NYKK+ ++   L+   P G+D+YF+NVGG + D
Sbjct:   39 VQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISD 238          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.408e-24
Identity = 77/224 (34.38%), Postives = 117/224 (52.23%), Query Frame = 1
Query:   85 GFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGL-TSWEEYSLIQSPQHLIKILDTNVP--LSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG 738
            G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++A +   +   G G+  + +S H    K D V      W+  +++     L K+    V   LSY+ G +GMPGLT+  G+ E    S    + + VS A+GA G L GQ   L+GC  VVG  G+ EK   L ++ GFD A NY K  ++   L+   P+G+D+YF+NVGG
Sbjct:   16 GNPVAENFRVEEVSLPDTINEGQ---VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDG-NGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELGFDAAVNY-KTGNVAEQLREACPDGVDVYFDNVGG 234          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 78/224 (34.82%), Postives = 117/224 (52.23%), Query Frame = 1
Query:   85 GFPKESDMKIITGSINLKVPEGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGL-TSWEEYSLIQSPQHLIKILDTNVP--LSYYTGILGMPGLTAYGGLYEL--CSPKKGEYVYVSAASGAVGQLVGQFAKLVGC-YVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG 738
            G P   + ++   S+   + EG    V ++ LYLS DPYMR +M++     ++A +   +   G G+  V +S H    K D V      W+  +++     L K+    V   LSY+ G +GMPGLT+  G+ E    S    + + VS A+GA G L GQ   L+GC  VVG  G++EK   L ++ GFD A NY K  ++   L+   P G+D+YF+NVGG
Sbjct:   16 GNPVAENFRVEEFSLPDALNEGQ---VQVRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDG-NGLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNY-KTGNVAEQLREACPGGVDVYFDNVGG 234          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: ZADH2_MOUSE (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Mus musculus GN=Zadh2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.679e-15
Identity = 67/213 (31.46%), Postives = 104/213 (48.83%), Query Frame = 1
Query:  139 VPEGSKDTVLLKNLYLSCDP----YMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLD---STHPNYKKDDLVWGLT--SWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            VP      +L++N ++  +     Y  GR     KP F   F         G+ +V+    S    Y     V  +   S+ EY+++ +    I I   +V   Y T ++   G TAY  L EL    +G+ V V+AA+G  GQ   Q +K+  C+V+G+  S EK   LK+  G D   NY+ EP ++  LK+ +PEG+D+ +E+VGG M D
Sbjct:   57 VPLPGDGDLLVRNRFVGINASDINYSAGRYDPSLKPPFDIGFE--------GIGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPAS---IAIPMPSVKPEYLTMLVS--GTTAYLSLEELGELSEGKKVLVTAAAGGTGQFAVQLSKIAKCHVIGTCSSDEKAAFLKS-IGCDRPINYRTEP-VETVLKQEYPEGVDVVYESVGGAMFD 254          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: ZADH2_HUMAN (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Homo sapiens GN=ZADH2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.332e-15
Identity = 70/221 (31.67%), Postives = 105/221 (47.51%), Query Frame = 1
Query:  115 ITGSINLKVPEGSKDTVLLKNLYLSCDP----YMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLD---STHPNYKKDDLVWGLT--SWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            +T S +  VP      +L++N ++  +     Y  GR     KP F   F         G+ +V+    S    Y     V  +   S+ EY+++ +    I     +V   Y T  L + G TAY  L EL    +G+ V V+AA+G  GQ   Q +K   C+V+G+  S EK   LK+  G D   NYK EP +   LK+ +PEG+D+ +E+VGG M D
Sbjct:   49 VTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFE--------GIGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPAS---IATPVPSVKPEYLT--LLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-LGCDRPINYKTEP-VGTVLKQEYPEGVDVVYESVGGAMFD 254          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: ZADH2_BOVIN (Zinc-binding alcohol dehydrogenase domain-containing protein 2 OS=Bos taurus GN=ZADH2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.870e-12
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  451 GLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG*MLD 750
            G TAY  L EL    +G+ V V+AA+G  GQ   Q AK   C+V+G+  S EK   LK+  G D   NY  E  +   L++ +P+G+D+ +E+VGG M D
Sbjct:  157 GTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAVQLAKKAKCHVIGTCSSAEKSAFLKS-VGCDRPINYNTE-HVGTVLRQEYPQGVDVVYESVGGAMFD 254          
The following BLAST results are available for this feature:
BLAST of FC923465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PTGR1_CAVPO4.106e-3842.02Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR1_HUMAN5.363e-3841.88Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR2_BOVIN2.761e-2634.21Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB1.049e-2536.82Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN3.052e-2536.32Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_RAT4.408e-2434.38Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]
PTGR2_MOUSE7.518e-2434.82Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
ZADH2_MOUSE1.679e-1531.46Zinc-binding alcohol dehydrogenase domain-containi... [more]
ZADH2_HUMAN8.332e-1531.67Zinc-binding alcohol dehydrogenase domain-containi... [more]
ZADH2_BOVIN3.870e-1241.00Zinc-binding alcohol dehydrogenase domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionC31705D02EF StrClemenN Citrus clementina cDNA clone C31705D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923465 ID=FC923465; Name=FC923465; organism=Citrus clementina; type=EST; length=751bp
GATCCAAAAACAAAATCTACATAAAAAATGGCGGGTGAAGAAGCAGTGAG
CAACAAGCAGGTGATTCTGAGCAACTACGTGACAGGGTTTCCCAAGGAAT
CAGACATGAAGATAATAACAGGCTCAATAAACCTGAAGGTGCCAGAGGGC
TCAAAAGACACAGTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTTA
CATGAGAGGACGTATGAGTAAGCTTGATAAGCCTTCGTTTGTTGCCTCCT
TCAACCCTGGCGAGCCCTTGGGCGGATATGGAGTGTCCAAAGTGTTGGAT
TCCACACATCCAAATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCAG
TTGGGAGGAGTACAGTCTCATCCAATCACCACAACATCTGATTAAAATTC
TGGATACAAATGTGCCTCTGTCATACTATACTGGGATTCTTGGTATGCCT
GGTTTGACTGCATATGGTGGTTTATATGAGCTTTGCTCTCCTAAGAAAGG
AGAGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTAGTTG
GGCAATTTGCAAAGTTGGTTGGTTGCTATGTTGTTGGAAGTGCAGGAAGC
AAAGAAAAGGTCAATCTGTTGAAGAACAAGTTTGGGTTTGATGATGCTTT
TAACTATAAGAAAGAGCCAGACTTGGATGCAGCTCTTAAGAGGTGCTTTC
CTGAAGGCATCGACATCTATTTCGAAAATGTTGGGGGGTAGATGCTTGAT
G
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