FC923465

Overview
NameFC923465
Unique NameFC923465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923465_ssr564 microsatellite FC923465_ssr564:564..575. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14471 contig Ccv1_Contig14471:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: QOR_LEIAM (Probable quinone oxidoreductase OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  436 ILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLV-GCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCFPEGIDIYFENVGG 738
            +L +  LTA   L E+   KKG+   V+AA+G  GQ+  Q  K V GC V+G+  S+EK   LK+  G D   NYK E  LD  L    P+G+D+ +E VGG
Sbjct:  125 VLPVSALTAAVALGEVGRVKKGDVALVTAAAGGTGQIAVQLLKHVYGCTVIGTCSSEEKAEFLKS-IGCDHVINYKTE-SLDGRLHELCPKGVDVVYECVGG 224          
BLAST of FC923465 vs. ExPASy Swiss-Prot
Match: YMN1_YEAST (Uncharacterized membrane protein YML131W OS=Saccharomyces cerevisiae GN=YML131W PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.299e-11
Identity = 62/208 (29.81%), Postives = 98/208 (47.12%), Query Frame = 1
Query:  163 VLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLGGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLI-QSPQHLIKILDTNV--PLSYYTGILGMPGLTAYGGLYELCSPKKGEYVY-----VSAASGAVGQLVGQFAKLV--GCYVVGSAGSKEKVNLLKNKFGFDDAFNYKKEPDLDAALKRCF--PEGIDIYFENVGG*MLD 750
            +LL+  YLS DP  +  +S +DK ++     PGE +   G+ KVL S +  +   D V  +T W  +++I Q     ++ LD N    L +Y  +LG   LTAY   +     ++ E  Y     +S A+GAVG +  Q A  V     V+  AG  EKV  +++ FG +      K+P     L         +D + +NVG  +L+
Sbjct:   47 LLLETTYLSNDPAQKFWISSMDK-NYAKGVQPGEIIPARGIGKVLASRNKAFSPGDYVSAVTGWTTHAIISQENVQGLRKLDKNKVGKLWWYLSVLGGTSLTAYFIFFTYAQLQEREEDYGKVYLISGAAGAVGTVCIQLALNVFKASKVIAIAGGPEKVAFVES-FGDNVVGVDYKDPSFKQKLIEAAGGENTVDYFIDNVGSNVLE 252          
The following BLAST results are available for this feature:
BLAST of FC923465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
QOR_LEIAM8.622e-1242.16Probable quinone oxidoreductase OS=Leishmania amaz... [more]
YMN1_YEAST7.299e-1129.81Uncharacterized membrane protein YML131W OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionC31705D02EF StrClemenN Citrus clementina cDNA clone C31705D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923465 ID=FC923465; Name=FC923465; organism=Citrus clementina; type=EST; length=751bp
GATCCAAAAACAAAATCTACATAAAAAATGGCGGGTGAAGAAGCAGTGAG
CAACAAGCAGGTGATTCTGAGCAACTACGTGACAGGGTTTCCCAAGGAAT
CAGACATGAAGATAATAACAGGCTCAATAAACCTGAAGGTGCCAGAGGGC
TCAAAAGACACAGTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTTA
CATGAGAGGACGTATGAGTAAGCTTGATAAGCCTTCGTTTGTTGCCTCCT
TCAACCCTGGCGAGCCCTTGGGCGGATATGGAGTGTCCAAAGTGTTGGAT
TCCACACATCCAAATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCAG
TTGGGAGGAGTACAGTCTCATCCAATCACCACAACATCTGATTAAAATTC
TGGATACAAATGTGCCTCTGTCATACTATACTGGGATTCTTGGTATGCCT
GGTTTGACTGCATATGGTGGTTTATATGAGCTTTGCTCTCCTAAGAAAGG
AGAGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTAGTTG
GGCAATTTGCAAAGTTGGTTGGTTGCTATGTTGTTGGAAGTGCAGGAAGC
AAAGAAAAGGTCAATCTGTTGAAGAACAAGTTTGGGTTTGATGATGCTTT
TAACTATAAGAAAGAGCCAGACTTGGATGCAGCTCTTAAGAGGTGCTTTC
CTGAAGGCATCGACATCTATTTCGAAAATGTTGGGGGGTAGATGCTTGAT
G
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