FC923472

Overview
NameFC923472
Unique NameFC923472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.531e-22
Identity = 60/175 (34.29%), Postives = 97/175 (55.43%), Query Frame = 1
Query:  175 YERWRSHHTVSRSLDEKHKRFNVFKQN--VMHVHQTNKMD--KPYKLKLNKFADMTNHEFASTYAG---SKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDC-DTXSNQGCNGGLMELAFEFIKKKG 675
            +  WR+ H  + +++E+  +  V+++N  ++ +H    ++    + + +N F D+TN EF     G    KIK   +FQ  +    F+Y     +P  VDWR+ G VT VK+QG C S WAFS   ++EG     T +L+ LSEQ L+DC  +    GC+GG M+ AF+++K  G
Sbjct:   29 WNEWRTKHGKTYNMNEERLKRAVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQ----FLY-----VPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDCMGSNVTHGCSGGFMQYAFQYVKDNG 194          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 65/154 (42.21%), Postives = 84/154 (54.55%), Query Frame = 1
Query:  220 EKHKRFNVFKQNVMHVHQTNKMDKPYKLKLN-KFADMTNHEFASTYAGSK-----IKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFI 663
            E+  RFN FKQN+   +  N  +      ++ KFAD+T  EFA  Y         +K+H+           +     S   SVDWR KG+VT VK+QG CGSCWAFS I  +EG      + LVSLSEQ LV CD   ++GCNGGLM+ A  +I
Sbjct:   58 EEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKNHK-------EDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCDNI-DEGCNGGLMDQAMNWI 203          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 60/161 (37.27%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  211 SLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTS------IPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            S DEK  R+N+F+ N+  ++  N  +     K+N+FADMT +E  + + G       +  G  G   F    V         P++ DWR    VT+VKDQG CG+CWAF+ + A+E    I  ++L+ L+EQ+LVDCD   + GC+GGL+  A+E I   G
Sbjct:   53 SEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTG-------LASGDIG-ANFCETIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCD-FVDMGCDGGLIHTAYEQIMHIG 204          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 57/162 (35.19%), Postives = 88/162 (54.32%), Query Frame = 1
Query:  211 SLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSI-------PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            S  EK +RF +F+ N+  +   N  D   + ++NKFAD++  E  S Y G  +             T  + +V  +       P   DWR+   VT+VK+QG CG+CWAF+T+ ++E    I  N+ ++LSEQ+L+DCD   + GC+GGL+  AFE +   G
Sbjct:   41 SESEKLRRFQIFRHNLEEIINKNHNDSTAQYEINKFADLSKDETISKYTGLSLPLQ----------TQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDCD-FVDAGCDGGLLHTAFEAVMNMG 191          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 52/81 (64.20%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  436 IPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCD-TXSNQGCNGGLMELAFEFIKKKG 675
            +P SVDW KKG VT VK+QGQCGSCWAFS   A+EG     T KLVSLSEQ LVD      NQGCNGGLM+ AF++IK+ G
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRPQGNQGCNGGLMDNAFQYIKENG 81          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.412e-22
Identity = 65/154 (42.21%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  220 EKHKRFNVFKQNVMHVHQTNKMDKPYKLKLN-KFADMTNHEFASTYAGSK-----IKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFI 663
            E+  RFN FKQN+   +  N  +      ++ KFAD+T  EFA  Y         +K H+           +     S   SVDWR KG+VT VK+QG CGSCWAFS I  +EG      + LVSLSEQ LV CD   ++GCNGGLM+ A  +I
Sbjct:   58 EEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKDHK-------EDVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCDNI-DEGCNGGLMDQAMNWI 203          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CPGP1_ZINOF (Zingipain-1 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.412e-22
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:  436 IPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            +P S+DWR+KG+V  VK+QG CGSCWAF  IAAVEGIN I+T  L+SLSEQ+LVDC T  N GC GG    AF++I   G
Sbjct:    3 LPDSIDWREKGAVVPVKNQGGCGSCWAFDAIAAVEGINQIVTGDLISLSEQQLVDCST-RNHGCEGGWPYRAFQYIINNG 81          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.412e-22
Identity = 63/178 (35.39%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  175 YERW-RSHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAG----------SKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            YE + + H+    + D++   F  FK+N+  ++  N +       +NKF+D+    F + +AG          S    +R+ +        + G     P S DWRK   VT VK+QG CGSCWAF+ I  +E    IM + L+ LSEQ+L+DCD   +QGC+GGLM LAF+ I + G
Sbjct:   33 YENFIKQHNKEYTTPDQRDAAFVNFKRNLADMNAMNNVSNQAVYGINKFSDIDKITFVNEHAGLVSNLINSTDSNFDPYRLCEYVT-----VAGPSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCDRV-DQGCDGGLMHLAFQEIIRIG 204          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 61/175 (34.86%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  175 YERWRSHHTVSRSLDEKHKRFNVFKQN--VMHVHQTNKMD--KPYKLKLNKFADMTNHEFASTYAG---SKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDC-DTXSNQGCNGGLMELAFEFIKKKG 675
            +  WR+ H  + +++E+  R  V+++N  ++ +H    ++    + + +N F D+TN EF     G    KIK   +FQ  +    F+Y     +P  VDWR  G VT VK+QG C S WAFS   ++EG     T +LV LSEQ L+DC  +     C+GG M+ AF+++K  G
Sbjct:   29 WNEWRTKHGKAYNVNEERLRRAVWEKNFKMIELHNWEYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFRRQKIKRMHVFQDHQ----FLY-----VPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQNAFQYVKDNG 194          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            P S+DWR KG+VT VK+Q  CGSCWAFST+A VEGIN I T KL+SLSEQEL+DCD  S+ GC GG    + +++   G
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRRSH-GCKGGYQTGSIQYVADNG 79          
The following BLAST results are available for this feature:
BLAST of FC923472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
TEST2_RAT1.531e-2234.29Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
LMCPA_LEIME2.000e-2242.21Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]
CATV_NPVMC2.000e-2237.27Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATV_NPVCF2.612e-2235.19Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATL1_SHEEP2.612e-2264.20Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CYSP1_LEIPI3.412e-2242.21Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
CPGP1_ZINOF3.412e-2261.25Zingipain-1 OS=Zingiber officinale PE=1 SV=1[more]
CATV_NPVST3.412e-2235.39Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
TEST2_MOUSE1.296e-2134.86Testin-2 OS=Mus musculus PE=2 SV=1[more]
MEX2_JACME1.296e-2159.49Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31705D10EF StrClemenN Citrus clementina cDNA clone C31705D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923472 ID=FC923472; Name=FC923472; organism=Citrus clementina; type=EST; length=677bp
GATCTTGAGTTGAATCATACTCGTAAGTACCACTTGAAAAAGAAAAAAAA
AGGTTAAAAAATGAAGAGGGTTTATTTATTAGCTGCCTTTTTGCTAGCTT
TGGTTCTGGGAATCGTTGAGGGTTTCGATTTCCATGAGAAGGAGTTGGAA
TCCGAGGAAGGTCTGTGGGATTTATACGAGAGGTGGAGGAGTCATCATAC
GGTTTCAAGGAGTCTTGATGAGAAGCATAAGCGCTTCAATGTGTTCAAGC
AAAATGTTATGCATGTTCACCAAACTAACAAGATGGACAAGCCTTACAAG
TTGAAGCTGAACAAGTTTGCGGACATGACAAATCATGAATTTGCAAGCAC
ATACGCTGGATCAAAGATTAAGCATCACAGGATGTTCCAAGGGACGCGTG
GAAACGGGACCTTCATGTATGGGAAGGTAACGAGTATCCCATCATCAGTC
GATTGGAGGAAGAAAGGGTCTGTCACCGCTGTCAAGGATCAAGGCCAATG
CGGTAGCTGCTGGGCTTTTTCAACAATTGCAGCAGTAGAGGGCATTAATC
ACATTATGACAAATAAGCTCGTTTCTTTGTCTGAGCAAGAGTTAGTTGAT
TGTGACACTNGATCAAACCAAGGATGTAATGGAGGGCTAATGGAATTGGC
ATTTGAGTTCATCAAGAAAAAGGGTGG
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