FC923472

Overview
NameFC923472
Unique NameFC923472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.363e-23
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:  439 PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCD-TXSNQGCNGGLMELAFEFIKKKG 675
            P SVDWR+KG VT VKDQGQCGSCWAFST  A+EG +     KLVSLSEQ LVDC     NQGCNGGLM+ AF++++  G
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSRPEGNQGCNGGLMDQAFQYVQDNG 81          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.363e-23
Identity = 69/182 (37.91%), Postives = 98/182 (53.85%), Query Frame = 1
Query:  145 LESEEGLWDLYERWRSHHT--VSRSLDEKHKRFNVFKQNVMHVHQTNKMDK----PYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTS-IPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKK 669
            L  EE L   +E W+  H    +  +DE  +R  ++++N+ ++   N         Y+L +N   DMT+ E      G K+        +R N T    +     P SVD+RKKG VT VK+QGQCGSCWAFS++ A+EG     T KL++LS Q LVDC    N GC GG M  AF++++K
Sbjct:   16 LYPEEILDTHWELWKKTHRKQYNNKVDEISRRL-IWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVP----LSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYVQK 191          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.086e-23
Identity = 58/156 (37.18%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  211 SLDEKHKRFNVFKQNVMHVHQTNKMDK-PYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            S  E+  R  +F+QN+  + + N  +    K  + +FADMT+ E+      + +      + T G+   +      +P   DWR+K +VT VK+QG CGSCWAFS    +EG+  + T +L   SEQEL+DCDT ++  CNGGLM+ A++ IK  G
Sbjct:  321 STAERQMRLRIFRQNLKTIEELNANEMGSAKYGITEFADMTSSEYKER---TGLWQRDEAKATGGSAAVVPAYHGELPKEFDWRQKDAVTQVKNQGSCGSCWAFSVTGNIEGLYAVKTGELKEFSEQELLDCDT-TDSACNGGLMDNAYKAIKDIG 472          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CYSP_THEPA (Cysteine proteinase OS=Theileria parva GN=TP03_0285 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.030e-23
Identity = 68/209 (32.54%), Postives = 106/209 (50.72%), Query Frame = 1
Query:  118 EGFDFHEKELESEEGLWDLYERWRSHHTVSRSLD-EKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTS----------------------IPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            +GF   + +LE E  ++  +E + S +    +   E+  R   F+ N + V +  K D+PY   +N+F+D+T  EF   +   K       + T  NG ++   + +                         ++DWR+  SVT+VKDQ  CG CWAFST+ +VEG      +K   LS QEL+DCD+ SN GC GGL+E A+E+++K G
Sbjct:  108 DGFLSDDPKLEYE--VYREFEEFNSKYNRRHATQQERLNRLVTFRSNYLEVKE-QKGDEPYVKGINRFSDLTEREFYKLFPVMKPP-----KATYSNGYYLLSHMANKTYLKNLKKALNTDEDVDLAKLTGENLDWRRSSSVTSVKDQSNCGGCWAFSTVGSVEGYYMSHFDKSYELSVQELLDCDSFSN-GCQGGLLESAYEYVRKYG 307          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.030e-23
Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  211 SLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSI-------PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            S  EK  RF +F+ N+  +   N+ D   + ++NKF+D++  E  S Y G  + H           T  + +V  +       P   DWR+   VT+VK+QG CG+CWAF+T+ ++E    I  N+L++LSEQ+ +DCD   N GC+GGL+  AFE   + G
Sbjct:   41 SESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGLSLPHQ----------TQNFCEVVILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCDRV-NAGCDGGLLHTAFESAMEMG 191          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.030e-23
Identity = 62/177 (35.03%), Postives = 96/177 (54.24%), Query Frame = 1
Query:  166 WDLYERWRSHHTVSRSLDEKHKRFNVFKQNV----MHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDC---DTXSNQGCNGGLMELAFEFIKKKG 675
            WDL+++  +H    +  +E+  R  ++++N+    +H  + +     Y++ +N   DMTN E +      +I        +    TF      ++P +VDWR+KG VT VK QG CG+CWAFS + A+EG   + T KL+SLS Q LVDC   +   N+GC GG M  AF++I   G
Sbjct:   36 WDLWKK--THEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISCRMGALRISRQ-----SPKTVTFRSYSNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNEEKYGNKGCGGGYMTEAFQYIIDNG 205          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 60/176 (34.09%), Postives = 98/176 (55.68%), Query Frame = 1
Query:  169 DLYERWRSHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSI-------PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            D   ++  H++   S  EK +RF +F+ N+  +   N+ D   + ++NKF+D++  E  S Y G  +             T  + +V  +       P   DWR+   VT+VK+QG CG+CWAF+T+A++E    I  N+L++LSEQ+L+DCD   + GCNGGL+  A+E + + G
Sbjct:   30 DFLHKFNKHYS---SESEKLRRFQIFQHNLEEIIIKNQNDTTAQYEINKFSDLSKDETISKYTGLALPLQ----------TQNFCEVVVLNRPPDKGPLEFDWRRLNKVTSVKNQGICGACWAFATLASLESQFAIKHNQLINLSEQQLIDCD-YVDAGCNGGLLHTAYEAVMQMG 191          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 60/159 (37.74%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  220 EKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSI-------PSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDTXSNQGCNGGLMELAFEFIKKKG 675
            EK +RF +F+ N+  +   N+ D   K ++NKF+D++  E  + Y G  +             T  + KV  +       P   DWR+   VT+VK+QG CG+CWAF+T+A++E    I  N+L++LSEQ+++DCD   + GCNGGL+  AFE I K G
Sbjct:   44 EKLRRFKIFQHNLNEIINKNQNDSA-KYEINKFSDLSKDETIAKYTGLSLPIQ----------TQNFCKVIVLDQPPGKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLASLESQFAIKHNQLINLSEQQMIDCD-FVDAGCNGGLLHTAFEAIIKMG 190          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = 1
Query:  166 WDLYERWRSHHTVSRSLDEKHKRFNVFKQNV----MHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDT---XSNQGCNGGLMELAFEFI 663
            WDL+++ R      ++  E+  R  ++++N+    +H  + +     Y + +N   DMT  E    Y GS     R+ +    +GT       ++P SVDWR+KG VT VK QG CGSCWAFS   A+EG   + T KLVSLS Q LVDC T     N+GC GG M  AF++I
Sbjct:   26 WDLWKKTRMRRNTDQN--EEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEVIG-YMGSL----RIPRPWNRSGTLKSSSNQTLPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTEEKYGNKGCGGGFMTEAFQYI 191          
BLAST of FC923472 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 64/161 (39.75%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  187 RSHHTVSRSLDEKHKRFNVFKQNVMHVHQTNKMDKPYKLKLNKFADMTNHEFASTYAGSKIKHHRMFQGTRGNGTFMYGKVTSIPSSVDWRKKGSVTAVKDQGQCGSCWAFSTIAAVEGINHIMTNKLVSLSEQELVDCDT--XSNQGCNGGLMELAFEFI 663
            ++   V R + EK+ +F V   N+ H    +     Y L +N   DMT+ E  S  +  ++         + N T+       +P SVDWR+KG VT VK QG CG+CWAFS + A+E    + T KLVSLS Q LVDC T    N+GCNGG M  AF++I
Sbjct:   42 KNEEAVRRLIWEKNLKF-VMLHNLEHSMGMHS----YDLGMNHLGDMTSEEVMSLMSSLRVPSQ-----WQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 192          
The following BLAST results are available for this feature:
BLAST of FC923472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
CATL1_CHICK2.363e-2365.00Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATK_HUMAN2.363e-2337.91Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CPR1_DROME3.086e-2337.18Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CYSP_THEPA4.030e-2332.54Cysteine proteinase OS=Theileria parva GN=TP03_028... [more]
CATV_NPVOP4.030e-2335.80Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATS_MOUSE4.030e-2335.03Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATV_NPVHC5.263e-2334.09Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATV_NPVAC5.263e-2337.74Viral cathepsin OS=Autographa californica nuclear ... [more]
CATS_RAT5.263e-2338.73Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATS_HUMAN5.263e-2339.75Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC31705D10EF StrClemenN Citrus clementina cDNA clone C31705D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923472 ID=FC923472; Name=FC923472; organism=Citrus clementina; type=EST; length=677bp
GATCTTGAGTTGAATCATACTCGTAAGTACCACTTGAAAAAGAAAAAAAA
AGGTTAAAAAATGAAGAGGGTTTATTTATTAGCTGCCTTTTTGCTAGCTT
TGGTTCTGGGAATCGTTGAGGGTTTCGATTTCCATGAGAAGGAGTTGGAA
TCCGAGGAAGGTCTGTGGGATTTATACGAGAGGTGGAGGAGTCATCATAC
GGTTTCAAGGAGTCTTGATGAGAAGCATAAGCGCTTCAATGTGTTCAAGC
AAAATGTTATGCATGTTCACCAAACTAACAAGATGGACAAGCCTTACAAG
TTGAAGCTGAACAAGTTTGCGGACATGACAAATCATGAATTTGCAAGCAC
ATACGCTGGATCAAAGATTAAGCATCACAGGATGTTCCAAGGGACGCGTG
GAAACGGGACCTTCATGTATGGGAAGGTAACGAGTATCCCATCATCAGTC
GATTGGAGGAAGAAAGGGTCTGTCACCGCTGTCAAGGATCAAGGCCAATG
CGGTAGCTGCTGGGCTTTTTCAACAATTGCAGCAGTAGAGGGCATTAATC
ACATTATGACAAATAAGCTCGTTTCTTTGTCTGAGCAAGAGTTAGTTGAT
TGTGACACTNGATCAAACCAAGGATGTAATGGAGGGCTAATGGAATTGGC
ATTTGAGTTCATCAAGAAAAAGGGTGG
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