FC923474

Overview
NameFC923474
Unique NameFC923474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP1_THEEB (ATP-dependent Clp protease proteolytic subunit 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGA------VDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  GG       +DD +A+ IVAQLL+LDA DP KDI +Y+NSPGGSVTAGMAI+DTMKHIRPD
Sbjct:   40 ERAFDIYSRLLRERIIFLGGGAGDRRGIDDAVADSIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMAIYDTMKHIRPD 118          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_DESPS (ATP-dependent Clp protease proteolytic subunit OS=Desulfotalea psychrophila GN=clpP PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  V+DD+AN+IVAQLL+L+A DP KDI  Y+NSPGGSVTAGMAI+DTM++I+ D
Sbjct:   15 ERSYDIYSRLLKERIIFLGSGVNDDVANVIVAQLLFLEAEDPEKDITFYINSPGGSVTAGMAIYDTMQYIKCD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBB (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII   G V+DD +N+IV+QLL+L++ DP KDI IY+NSPGGS+TAGMAI+DTM++I+PD
Sbjct:   15 ERSYDIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGMAIYDTMQYIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_CLOBA (ATP-dependent Clp protease proteolytic subunit OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII   G V+DD +N+IV+QLL+L++ DP KDI IY+NSPGGS+TAGMAI+DTM++I+PD
Sbjct:   15 ERSYDIFSRLLKERIIMLSGEVNDDSSNLIVSQLLFLESEDPDKDISIYINSPGGSITAGMAIYDTMQYIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_FUSNN (ATP-dependent Clp protease proteolytic subunit OS=Fusobacterium nucleatum subsp. nucleatum GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G A+D+ +AN I+AQLLYL+A DP KDI++Y+NSPGGSVT GMAI+DTM +I+PD
Sbjct:   14 ERAYDIYSRLLKDRIIFVGTAIDETVANSIIAQLLYLEAEDPEKDIIMYINSPGGSVTDGMAIYDTMNYIKPD 86          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_ACTSZ (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=clpP PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 44/73 (60.27%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I   G V+D+MAN+IVAQLL+L++ DP KDI +Y+NSPGGSVTAGMAI+DTM+ I+PD
Sbjct:   15 ERSYDIYSRLLKERVIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDTMQFIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP2_DESHY (ATP-dependent Clp protease proteolytic subunit 2 OS=Desulfitobacterium hafniense (strain Y51) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  GG V DD+AN++VAQ+L+L+A DP KDI +Y+NSPGGS++AGMAI+DTM++IR D
Sbjct:   16 ERSYDIYSRLLKDRIIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFLYINSPGGSISAGMAIYDTMQYIRAD 88          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_BACP2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus pumilus (strain SAFR-032) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRP 735
            ER   + S+L + RII  G A+DD++AN IV+QLL+L+A DP KDI IY+NSPGGS+TAGMAI+DTM+ I+P
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKP 86          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_BACA2 (ATP-dependent Clp protease proteolytic subunit OS=Bacillus amyloliquefaciens (strain FZB42) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRP 735
            ER   + S+L + RII  G A+DD++AN IV+QLL+L+A DP KDI IY+NSPGGS+TAGMAI+DTM+ I+P
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKP 86          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP2_BACSK (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus clausii (strain KSM-K16) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  VDD++AN IVAQ+L+L A DP KDI +Y+NSPGGS+TAGMAI+DTM+ I+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSGVDDNVANSIVAQMLFLQAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPD 87          
The following BLAST results are available for this feature:
BLAST of FC923474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_THEEB4.143e-1962.03ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_DESPS5.412e-1961.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBB5.412e-1958.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOBA5.412e-1958.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_FUSNN7.068e-1960.27ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ACTSZ7.068e-1960.27ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_DESHY7.068e-1958.90ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_BACP29.231e-1961.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_BACA29.231e-1961.11ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_BACSK9.231e-1960.27ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionC31705D12EF StrClemenN Citrus clementina cDNA clone C31705D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923474 ID=FC923474; Name=FC923474; organism=Citrus clementina; type=EST; length=739bp
GGTTGCAACTTGCAAGTCATTTTTTGTTGTTGCTGGAACGGTACTCTTAT
CGGTCCAAATCCCGGCGCCCTCCACATCCAGCCTTTAACATCAAGCAGAT
AAGGCGCTTCTGATTTGGAGGAAAATAAAAAGCCTCCACCTAATTTACCG
AAAACGTCTTTCAGACACTGCCACATAAACGGCAAAAATCGAAGAGATAT
GGCACAAACGAGCGCTTCCACATCTTCGGCATCGTTGTACTCTCTTGTCG
TCTCTCCAAACCCTAGCTCCAATATCGACGCTCATAAACTCTCTCACACC
TTCCGCCCCATTGGTTCCCGGAAACCAAGGAAACTAGTTAGTATTCAAAA
GAATTTGCGGAATTCTTCAGTAAGGGCTGTCTACTCTGGCAAGTTTTGGG
CTCCAGATAGAAGTTATCGCCAGGGGATTTGGTCCATTAGGGATGATTTG
CAAATCCCATCTTCACCATACTTCCCTGTACATGCGCAAGGGCCACCACC
TGCTAACCCGATGGTGCAAGAGCGGTTTCAGAGTGTTATCAGTCAACTTT
TCCAGCATAGAATAATTCGCTGTGGTGGAGCTGTTGATGATGACATGGCG
AACATTATTGTAGCTCAGCTTCTCTATCTTGATGCTATTGATCCTCACAA
GGATATTGTTATCTATGTCAATTCTCCAGGAGGATCAGTTACTGCCGGTA
TGGCCATATTTGACACTATGAAGCATATTCGACCTGATG
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