FC923474

Overview
NameFC923474
Unique NameFC923474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10352 contig Ccv1_Contig10352:52..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP1_BACLD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRP 735
            ER   + S+L + RII  G A+DD++AN IV+QLL+L+A DP KDI IY+NSPGGS+TAGMAI+DTM+ I+P
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDTMQFIKP 86          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP1_BACHD (ATP-dependent Clp protease proteolytic subunit 1 OS=Bacillus halodurans GN=clpP1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.231e-19
Identity = 44/73 (60.27%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G A+DD++AN IVAQLL+L A DP KDI +Y+NSPGGS+TAGMAI+DTM++I+P+
Sbjct:   15 ERAYDIYSRLLKDRIIMLGTAIDDNVANSIVAQLLFLQAEDPDKDISLYINSPGGSITAGMAIYDTMQYIKPN 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_HAEIN (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus influenzae GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I   G V+D MAN+IVAQLL+L++ DP KDI IY+NSPGGSVTAGMAI+DTM+ I+PD
Sbjct:   15 ERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_HAEIG (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus influenzae (strain PittGG) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I   G V+D MAN+IVAQLL+L++ DP KDI IY+NSPGGSVTAGMAI+DTM+ I+PD
Sbjct:   15 ERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_HAEIE (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus influenzae (strain PittEE) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I   G V+D MAN+IVAQLL+L++ DP KDI IY+NSPGGSVTAGMAI+DTM+ I+PD
Sbjct:   15 ERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_HAEI8 (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus influenzae (strain 86-028NP) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I   G V+D MAN+IVAQLL+L++ DP KDI IY+NSPGGSVTAGMAI+DTM+ I+PD
Sbjct:   15 ERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINIYINSPGGSVTAGMAIYDTMQFIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_DESAH (ATP-dependent Clp protease proteolytic subunit OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.206e-18
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G A+DD++AN+IVAQLL+L++ DP KDI  Y+NSPGG VTAGMA++DTM++I+PD
Sbjct:   15 ERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDINFYINSPGGVVTAGMAVYDTMQYIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_XANOR (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas oryzae pv. oryzae GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I   G +DD MAN+IVAQLL+L+A +P KDI IY+NSPGG VTAGMAI+DTM++I+PD
Sbjct:   22 ERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPD 94          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_XANOP (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I   G +DD MAN+IVAQLL+L+A +P KDI IY+NSPGG VTAGMAI+DTM++I+PD
Sbjct:   22 ERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPD 94          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_XANOM (ATP-dependent Clp protease proteolytic subunit OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=clpP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I   G +DD MAN+IVAQLL+L+A +P KDI IY+NSPGG VTAGMAI+DTM++I+PD
Sbjct:   22 ERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYINSPGGVVTAGMAIYDTMQYIKPD 94          
The following BLAST results are available for this feature:
BLAST of FC923474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP1_BACLD9.231e-1961.11ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_BACHD9.231e-1960.27ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_HAEIN1.206e-1861.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEIG1.206e-1861.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEIE1.206e-1861.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEI81.206e-1861.64ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_DESAH1.206e-1858.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANOR1.575e-1860.27ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANOP1.575e-1860.27ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_XANOM1.575e-1860.27ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31705D12EF StrClemenN Citrus clementina cDNA clone C31705D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923474 ID=FC923474; Name=FC923474; organism=Citrus clementina; type=EST; length=739bp
GGTTGCAACTTGCAAGTCATTTTTTGTTGTTGCTGGAACGGTACTCTTAT
CGGTCCAAATCCCGGCGCCCTCCACATCCAGCCTTTAACATCAAGCAGAT
AAGGCGCTTCTGATTTGGAGGAAAATAAAAAGCCTCCACCTAATTTACCG
AAAACGTCTTTCAGACACTGCCACATAAACGGCAAAAATCGAAGAGATAT
GGCACAAACGAGCGCTTCCACATCTTCGGCATCGTTGTACTCTCTTGTCG
TCTCTCCAAACCCTAGCTCCAATATCGACGCTCATAAACTCTCTCACACC
TTCCGCCCCATTGGTTCCCGGAAACCAAGGAAACTAGTTAGTATTCAAAA
GAATTTGCGGAATTCTTCAGTAAGGGCTGTCTACTCTGGCAAGTTTTGGG
CTCCAGATAGAAGTTATCGCCAGGGGATTTGGTCCATTAGGGATGATTTG
CAAATCCCATCTTCACCATACTTCCCTGTACATGCGCAAGGGCCACCACC
TGCTAACCCGATGGTGCAAGAGCGGTTTCAGAGTGTTATCAGTCAACTTT
TCCAGCATAGAATAATTCGCTGTGGTGGAGCTGTTGATGATGACATGGCG
AACATTATTGTAGCTCAGCTTCTCTATCTTGATGCTATTGATCCTCACAA
GGATATTGTTATCTATGTCAATTCTCCAGGAGGATCAGTTACTGCCGGTA
TGGCCATATTTGACACTATGAAGCATATTCGACCTGATG
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