FC923474

Overview
NameFC923474
Unique NameFC923474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10352 contig Ccv1_Contig10352:52..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_ACTP2 (ATP-dependent Clp protease proteolytic subunit OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII   G V+D MAN+IVAQ+L+L+A DP KDI +Y+NSPGG VTAG+AI+DTM  I+PD
Sbjct:   15 ERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPD 87
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_STAS1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPD 87
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_STAES (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPD 87
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_STAEQ (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPD 87
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_STAAW (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MW2) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPD 87
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_STAAT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPD 87
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_STAAS (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MSSA476) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPD 87
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_STAAR (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MRSA252) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPD 87
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_STAAN (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain N315) GN=clpP PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPD 87
[Close]
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_STAAM (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpP PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DT++HI+PD
Sbjct:   15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPD 87
The following BLAST results are available for this feature:
BLAST of FC923474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_ACTP27.814e-1858.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAS11.021e-1757.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAES1.021e-1757.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAEQ1.021e-1757.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAW1.021e-1757.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAT1.021e-1757.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAS1.021e-1757.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAR1.021e-1757.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAN1.021e-1757.53ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAM1.021e-1757.53ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31705D12EF StrClemenN Citrus clementina cDNA clone C31705D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923474 ID=FC923474; Name=FC923474; organism=Citrus clementina; type=EST; length=739bp
GGTTGCAACTTGCAAGTCATTTTTTGTTGTTGCTGGAACGGTACTCTTAT
CGGTCCAAATCCCGGCGCCCTCCACATCCAGCCTTTAACATCAAGCAGAT
AAGGCGCTTCTGATTTGGAGGAAAATAAAAAGCCTCCACCTAATTTACCG
AAAACGTCTTTCAGACACTGCCACATAAACGGCAAAAATCGAAGAGATAT
GGCACAAACGAGCGCTTCCACATCTTCGGCATCGTTGTACTCTCTTGTCG
TCTCTCCAAACCCTAGCTCCAATATCGACGCTCATAAACTCTCTCACACC
TTCCGCCCCATTGGTTCCCGGAAACCAAGGAAACTAGTTAGTATTCAAAA
GAATTTGCGGAATTCTTCAGTAAGGGCTGTCTACTCTGGCAAGTTTTGGG
CTCCAGATAGAAGTTATCGCCAGGGGATTTGGTCCATTAGGGATGATTTG
CAAATCCCATCTTCACCATACTTCCCTGTACATGCGCAAGGGCCACCACC
TGCTAACCCGATGGTGCAAGAGCGGTTTCAGAGTGTTATCAGTCAACTTT
TCCAGCATAGAATAATTCGCTGTGGTGGAGCTGTTGATGATGACATGGCG
AACATTATTGTAGCTCAGCTTCTCTATCTTGATGCTATTGATCCTCACAA
GGATATTGTTATCTATGTCAATTCTCCAGGAGGATCAGTTACTGCCGGTA
TGGCCATATTTGACACTATGAAGCATATTCGACCTGATG
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