FC923474

Overview
NameFC923474
Unique NameFC923474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10352 contig Ccv1_Contig10352:52..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_HAEPS (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII   G V+D+MA +I+AQ+L+L+A DP KDI +Y+NSPGG VTAG+AI+DTM  I+PD
Sbjct:   15 ERAYDIYSRLLKERIIFLNGGVEDEMAKLIIAQMLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_CLOPS (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens (strain SM101 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII   G V+D  AN++VAQLL+L++ DP KDI +Y+NSPGGS+T+GMAI+DTM++I+PD
Sbjct:   16 ERSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPD 88          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_CLOPE (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII   G V+D  AN++VAQLL+L++ DP KDI +Y+NSPGGS+T+GMAI+DTM++I+PD
Sbjct:   16 ERSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPD 88          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_CLOP1 (ATP-dependent Clp protease proteolytic subunit OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII   G V+D  AN++VAQLL+L++ DP KDI +Y+NSPGGS+T+GMAI+DTM++I+PD
Sbjct:   16 ERSYDIFSRLLKDRIIMLSGEVNDVTANLVVAQLLFLESEDPDKDIHLYINSPGGSITSGMAIYDTMQYIKPD 88          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_CALS8 (ATP-dependent Clp protease proteolytic subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 41/73 (56.16%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RI+   G + DD+A++IVAQLL+L+A DP KDI +Y+NSPGGSVTAG AI+DT+++I+PD
Sbjct:   16 ERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGFAIYDTIQYIKPD 88          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_ANOFW (ATP-dependent Clp protease proteolytic subunit OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  +DD +AN IV+QLL+L A DP KDI +Y+NSPGGS+TAGMAI+DTM+ I+PD
Sbjct:   15 ERAYDIYSRLLKDRIIILGSPIDDHVANSIVSQLLFLAAEDPEKDISLYINSPGGSITAGMAIYDTMQFIKPD 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNY3 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII  G  VDD +A+ IVAQLL+LDA DP KDI +Y+NSPGGSV AG+AI+DTM+ IRPD
Sbjct:   35 ERAFDIYSRLLRERIIFLGTPVDDQVADSIVAQLLFLDAEDPEKDIQLYINSPGGSVYAGLAIYDTMQQIRPD 107          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP1_TREDE (ATP-dependent Clp protease proteolytic subunit 1 OS=Treponema denticola GN=clpP1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + RII   G ++D  A+++VAQLL+L+A +P KDI +Y+NSPGGSVTAG+AI+DTM+HIRPD
Sbjct:   16 ERSYDIFSRLLKDRIIFVDGEINDMSADLVVAQLLFLEAQNPDKDISLYINSPGGSVTAGLAIYDTMQHIRPD 88          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP1_MYXXD (ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 40/71 (56.34%), Postives = 58/71 (81.69%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIR 732
            ER   + S+L + RI+  G  +DDD+AN+IVAQLL+L++ DP KDI +Y+NSPGGSVTAG+AI+DTM++++
Sbjct:   17 ERSYDIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPGGSVTAGLAIYDTMQYVK 87          
BLAST of FC923474 vs. ExPASy Swiss-Prot
Match: CLPP_THICR (ATP-dependent Clp protease proteolytic subunit OS=Thiomicrospira crunogena (strain XCL-2) GN=clpP PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.333e-17
Identity = 43/73 (58.90%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  520 ERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAIDPHKDIVIYVNSPGGSVTAGMAIFDTMKHIRPD 738
            ER   + S+L + R+I   G V+D MAN+IVAQLL+L++ +P KDI +Y+NSPGGSVTAGMAI+DTM+ I+PD
Sbjct:   22 ERSFDIYSRLLKERVIFLVGQVEDHMANLIVAQLLFLESENPDKDIHLYINSPGGSVTAGMAIYDTMRFIKPD 94          
The following BLAST results are available for this feature:
BLAST of FC923474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_HAEPS1.021e-1756.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOPS1.021e-1756.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOPE1.021e-1756.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOP11.021e-1756.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CALS81.021e-1756.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANOFW1.021e-1758.90ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNY31.021e-1761.64ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_TREDE1.021e-1757.53ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP1_MYXXD1.021e-1756.34ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THICR1.333e-1758.90ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31705D12EF StrClemenN Citrus clementina cDNA clone C31705D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923474 ID=FC923474; Name=FC923474; organism=Citrus clementina; type=EST; length=739bp
GGTTGCAACTTGCAAGTCATTTTTTGTTGTTGCTGGAACGGTACTCTTAT
CGGTCCAAATCCCGGCGCCCTCCACATCCAGCCTTTAACATCAAGCAGAT
AAGGCGCTTCTGATTTGGAGGAAAATAAAAAGCCTCCACCTAATTTACCG
AAAACGTCTTTCAGACACTGCCACATAAACGGCAAAAATCGAAGAGATAT
GGCACAAACGAGCGCTTCCACATCTTCGGCATCGTTGTACTCTCTTGTCG
TCTCTCCAAACCCTAGCTCCAATATCGACGCTCATAAACTCTCTCACACC
TTCCGCCCCATTGGTTCCCGGAAACCAAGGAAACTAGTTAGTATTCAAAA
GAATTTGCGGAATTCTTCAGTAAGGGCTGTCTACTCTGGCAAGTTTTGGG
CTCCAGATAGAAGTTATCGCCAGGGGATTTGGTCCATTAGGGATGATTTG
CAAATCCCATCTTCACCATACTTCCCTGTACATGCGCAAGGGCCACCACC
TGCTAACCCGATGGTGCAAGAGCGGTTTCAGAGTGTTATCAGTCAACTTT
TCCAGCATAGAATAATTCGCTGTGGTGGAGCTGTTGATGATGACATGGCG
AACATTATTGTAGCTCAGCTTCTCTATCTTGATGCTATTGATCCTCACAA
GGATATTGTTATCTATGTCAATTCTCCAGGAGGATCAGTTACTGCCGGTA
TGGCCATATTTGACACTATGAAGCATATTCGACCTGATG
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